RNA id: AMCG00006391


Basic Information

Item Value
RNA id AMCG00006391
length 750
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00006391
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3735291 ~ 3742281 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGATTGCGGTGGTCAGTGGCACACAGGACCTCCCCCACAGCCCAGAGCAGCCCAGGAGGAGACTCCACCCCCATGAGATGCAGTGCAAGGGTGCAGGGGGTGCAAGGagagagaagcagaagcAGAGAGAGCGGTGGACCGTCAGAGCCGGGGACACCGTCACCCTGGACAGCGACATCGGACATCAGAAAAATACTCTTTGGTTTGTACAGCGAGACGACGAGGCTCCGTTTCAGCTCATTTCAGCACATAAAATTGCAGGGTCTCATGACAATGTGTTCTGGGAAGCCTCTAAATGGTCCAGCCCTCATCTATCTCCCGTGTGGAAGTCCTCTGCACCGTCTATCAGTCTGCGGATCCAGAATATCACAGAGACAGACCTGGCGCTGTACTACTGCGCGGAGATTGATGGAACAGAGCTGACAGACACCCTCACCCTGCCGTCTGGAGCCTCACTGTCTCTCCCGCTCTACTGTCCTGGGCCGGTGGAGGTGCTctttgctgctgcaggagagggagcctgtgtctcagtgtgctcTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCGGTGCAGAACGGTTCTCTGACCCTGCGATCACTCACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGAGTCCAGCACCGACCGCACCATCAGCACCGTCTTTGTGACTGTCACCATCTCTGTCACTAGTCTGGACTTCCTGGATGGGCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137050 lncRNA downstream 20512 3698885 ~ 3714779 (-) False AMCG00006390
TU137017 lncRNA downstream 80168 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 80168 3586596 ~ 3655123 (-) True G109439
TU137003 lncRNA downstream 173347 3548614 ~ 3561944 (-) True G109432
TU136854 lncRNA downstream 302021 3340118 ~ 3433270 (-) True G109322
TU137079 lncRNA upstream 63375 3805656 ~ 3807787 (-) True G109472
TU137095 lncRNA upstream 84229 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 124439 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 233922 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 234428 3976709 ~ 4035331 (-) True G109609
AMCG00006390 mRNA downstream 6772 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006388 mRNA downstream 56874 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006382 mRNA downstream 169874 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006381 mRNA downstream 211272 3515708 ~ 3524019 (-) True AMCG00006381
AMCG00006380 mRNA downstream 220083 3506311 ~ 3515208 (-) True AMCG00006380
AMCG00006401 mRNA upstream 33785 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006398 mRNA upstream 41361 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006399 mRNA upstream 80634 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006397 mRNA upstream 96767 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006400 mRNA upstream 106083 3848364 ~ 3858917 (-) True AMCG00006400
TU136502 other downstream 1405300 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1605036 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1711148 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1853454 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2010443 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 422653 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2271823 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3043032 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3336108 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4980107 8722388 ~ 8724352 (-) True G110507

Expression Profile