RNA id: TU137096


Basic Information

Item Value
RNA id TU137096
length 2946
RNA type TUCP
GC content 0.47
exon number 3
gene id AMCG00006393
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3858934 ~ 3864732 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCTGCGCTTCCCCTGCCTTCACAGCAGCGACTCCGGCCACAACAACAACCCCCTCCCCGCCGCATCGTTCAGTATCGAGGTCCATTCCCTCGGCCTGAGCTGTCATCGTTTTAATAAACTGCAGTGTGGTTAGGTACTACTGGTAAGCCGCTGCTGTTTGCGCGTCGTGTGCTTTTTGATTTTTACCCATGATGGCGGAAGCGGCCAGCGGTTCCAGAGAGACGATAACGGAGACGGAGACGGTGCAGACGGACACAGCGCCACCCCAGCAGGAGGGCCGCAGTCTGACCATCAAgctgaggaagaggaagacGGATAAGAAGGTGGAGTGGTCCAGCGACACTGTGGACAACGAGCACCTGGGCCGGCGGTCATCCAAGTGCTGCTGTATCTATGAGAAGCCACGCCGGTTCGGGGAGAGCTCCTCAGAGAGTGAGGGTGAGGAGGATGGCTGCGGCAGCGTCAACTGCATCATGGGACACCGGCAACGAGCGTCTGACACAGCGCCGCCGGGAGCCGGAGGATCGGGACAGCAGCCACAGCAGGGCCGACACTCGCActgagagccagagagagagagacagaggggaacatacagggagagggaaagagggaggaaaCGGGGAGtgaggagagaagagaggatGCCGAGAGATGGAGTCAGAAAAATCTGATGGAGAAGGAACATAATGTTAAACATAGAGAGGCggaaaacagacacaaacactgatGGTGTCCCACTGACTCCGAAcaaggggaggagagagagagagggagggagacagagacagagagagagagagagagagagagagagagatgggtcaAATATGATTGTATGCCATCTGTCTtccctttcctttctctctctccaccaaactcctccctctttcccctttcttctctccttcccccatctctcgctcgctctctcctGTATAACGACTTGTTGCTGTAGACTCAGTATTGACCTAAGTTGACCAGATGCTgtatatgatattatattttattcccaAGACGCACTATTGACTGGACAGCTGCTGTCTTATTGGAGCTCGTCTGACAGTTTGAATGGGGCCAGTGAGTGGAGTTCACAGCCACCGCACTCACAACATCCGCAGATCCACAGCACTGgtgttaaataatacatgttcaCTCCCCCTGTttgctctcctctctcctgctctaCTGTCTAGTAccatactgcactacactgttCTGTATTGTACTTTACTACACTGTAGCATCAGTCAGTCTTCCAGTGTCTCTACCTTGTACATCTttcacacctctctctctctctctctctctctctctctctctctctctctcctccccatattctgtgtgtgagtttgtaatctctctctctctctctctctactggtGGGGGCAGAGCAGTGATATTACTCCAGTGCTGTAGGACTGGCGCCTGCATCACTCTGTGGTGAGGAACTGTATATAGTGAAAggactgttttatttaattttacaattgttGCGAATATGTTGATATGGTTTTGATTAAAAGAAACTAATCATCCAAACCATCgacgaaacaaacaaaaaaaggtgaTTGTATCAGAACTGTCCATGTCTTCTTCTAGAATGATGGCTGCTTATTAAACTTCAAAAGACcttcaattacaaaaataaataattttaaaatcatgatgatgataaatTGACTGACAATTATGTAAGATATCAGACTGATACAtttacacactgactgactgggaGATGGACTGATTGACTTATTTGCACACTGGCTGATGCACTCACAATAGCCCAGACTCTAAGTGGATCTGGGGGCAAAATCTGAATTTCAGACAATCCCTAATTTAAgcagcgacacacacacacattgctccCCCAAGGTAAAGTGCAGTTTCCCAGTAACCTAATTTCTGACCAGTTCCATATTTGtacacatacagtattttacaCAATTAGAACAGCAGACAAATACCAATCCCAGCTGTATTTACTGTGGTGTGTAGTGTAAAGTGCAGGCTATAACAGTGTGGAACAGCATGGTACGCTGCAGGGTGAGACTTGGCCTAAAGGATTGCAGCACTTCAGTCTTTTTTCATAGTTGCCATAGGAAAACTGTGCCATTCCTCCCTGCAGAGCCGAATCTAATGCCCTGCACTACAGTTTCCAGTGCAGTGTGTCCTACAATATAGATTCTGTTTCTCACAGTGCAGTTTCTAGGGCAGTACACTACAGCGCAGTAGTGCCAAACAAGGTGGGCTCTGCTGGTCCCTCCCTGATTGTATTCCAGtccatactatactatactatactacaccaCACCGCACAACTCTCCAACTCTCCACTGTGTTGCACTGTGTCGTGTTGTGTTCTAGTGTGTCGGTAGATGTACACGGGGCCCCTCACCTTCAAACTCCATCAGTGCTGGGCAGGACAGTTCAGTGTGGTTGCCCACAATATCCCACTGATCCAGTACTGGCCAGTCACAGGGCCCCTTCACAACAGCCCATCAAGctccacacagcacagcacctcTCACAGGACAGGCCGGTACTCACAGGCAGGCCtgtcccaatacttttggtATAGTAGTGAATGACTGGAAGAAATAATTGATCTTCTATTCACAGGGAAAGAGGGAGATATTGCTGGGAGGGAGAAATGTCTaggacattgtgtgtgtgtgtgtatatatatactgattgTTGCTGTCACTGCATCCCCTACACACATTTGATGGGATTCACATTAATATAAACCAACCACAAACACATGAAATCAGcataaatggatggatggattgtaTTATCAAATTCTTAAGATTTCATTACTCCTGTGTATGCCAAAATGAGGCATGGAAATGATTTTAATGATGTGATAAACTGTATGCATCTTTCTGTATAGAGATCATCATTAAAGACATGTTTGAGTTCTGTGTCAAGTCAcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136961 lncRNA upstream 84729 3772549 ~ 3774544 (+) True G109396
TU136954 lncRNA upstream 104232 3722519 ~ 3755041 (+) True G109392
TU136981 lncRNA upstream 128433 3729887 ~ 3730840 (+) True G109412
TU136971 lncRNA upstream 144494 3699108 ~ 3714779 (+) True G109405
TU136939 lncRNA upstream 237477 3618246 ~ 3621796 (+) False AMCG00006379
TU137110 lncRNA downstream 1215 3864485 ~ 3864732 (+) False AMCG00006393
TU137140 lncRNA downstream 46691 3909961 ~ 3911048 (+) True G109523
TU137147 lncRNA downstream 72710 3935980 ~ 3936902 (+) True G109530
TU137149 lncRNA downstream 80499 3943769 ~ 3943994 (+) True G109532
TU137159 lncRNA downstream 113458 3976728 ~ 4035308 (+) True G109541
AMCG00006395 mRNA upstream 19275 3832261 ~ 3839998 (+) True AMCG00006395
AMCG00006394 mRNA upstream 32524 3825568 ~ 3826749 (+) True AMCG00006394
AMCG00006396 mRNA upstream 35204 3823571 ~ 3824069 (+) True AMCG00006396
AMCG00006392 mRNA upstream 39449 3814613 ~ 3819824 (+) True AMCG00006392
AMCG00006389 mRNA upstream 95645 3749003 ~ 3763628 (+) True AMCG00006389
AMCG00006404 mRNA downstream 29993 3893263 ~ 3896458 (+) True AMCG00006404
AMCG00006410 mRNA downstream 56634 3919904 ~ 3920782 (+) True AMCG00006410
AMCG00006409 mRNA downstream 57964 3921234 ~ 3921928 (+) True AMCG00006409
AMCG00006408 mRNA downstream 59151 3922421 ~ 3924520 (+) True AMCG00006408
AMCG00006403 mRNA downstream 216356 4079626 ~ 4082166 (+) True AMCG00006403
TU136960 other upstream 218612 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 259576 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 285564 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 352594 3503181 ~ 3506679 (+) True G109362
TU136837 other upstream 493708 3361354 ~ 3365565 (+) False G109309
TU137156 other downstream 100327 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 289546 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 296253 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 613664 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 661536 4524806 ~ 4527738 (+) True AMCG00006445

Expression Profile