RNA id: AMCG00006395


Basic Information

Item Value
RNA id AMCG00006395
length 813
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00006395
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3832261 ~ 3839998 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGCTGCAGGGGTCGGGGGGGCCGTGGCACCGACTGGACGACGGACAGGCAGACGGACACGCACAGAGAAACGGACGGCAGGGCGGGCGGCTGCTGCCCGGCCCCAGAGCAGTCTTTATCCTTTGCCCATACTCTGGCTGATCTGCACTGTCCACAGAGCGCCCTCAGGGGCCGGCCAATGGAGATCTTTGTGGACGACGAGACGAAGCTGACCCTGCACGGCCTGCAGCAGTACTACGTCAAGCTGAAGGACAACGAGAAGAACCGCAAGCTGTTCGACCTGCTGGACGTGCTGGAGTTCAACCAGgtgGTGATCTTCGTGAAGTCAGTACAGCGCTGTGTGGCTCTGGCTCAGCTGCTGGTGGAGCAGAACTTCCCTGCCATCGCCATCCACAGAGGGATGCCCCAGGAGGAGAGgcTCTCTCGATATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCGACGAACCTGTTTGGCCGGGGGATGGACATCGAGAGGGTCAACATCGCCTTCAACTACGACATGCCCGAGGACTCAGACACCTACCTGCACAGGGTGGCGCGTGCTGGCCGGTTTGGCACTAAGGGCCTGGCCATCACCTTCGTATCGGACGAAAACGACGCCAAGATCCTGAACGACGTGCAGGACCGTTTCGAGGTCAACATCAGCGAGCTGCCAGACGAGATCGACATCTCCTCCTACATACCAGCTTCACATGCTGCCCAGAACCTCTGCCAggccctcttcctccctctccctctgcctgcaTTTGCTCCAGCCTCTGGCTCAGTCTCACCCTGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136961 lncRNA upstream 57717 3772549 ~ 3774544 (+) True G109396
TU136954 lncRNA upstream 77220 3722519 ~ 3755041 (+) True G109392
TU136981 lncRNA upstream 101421 3729887 ~ 3730840 (+) True G109412
TU136971 lncRNA upstream 117482 3699108 ~ 3714779 (+) True G109405
TU136939 lncRNA upstream 210465 3618246 ~ 3621796 (+) False AMCG00006379
TU137110 lncRNA downstream 24487 3864485 ~ 3864732 (+) False AMCG00006393
TU137140 lncRNA downstream 69963 3909961 ~ 3911048 (+) True G109523
TU137147 lncRNA downstream 95982 3935980 ~ 3936902 (+) True G109530
TU137149 lncRNA downstream 103771 3943769 ~ 3943994 (+) True G109532
TU137159 lncRNA downstream 136730 3976728 ~ 4035308 (+) True G109541
AMCG00006394 mRNA upstream 5512 3825568 ~ 3826749 (+) True AMCG00006394
AMCG00006396 mRNA upstream 8192 3823571 ~ 3824069 (+) True AMCG00006396
AMCG00006392 mRNA upstream 12437 3814613 ~ 3819824 (+) True AMCG00006392
AMCG00006389 mRNA upstream 68633 3749003 ~ 3763628 (+) True AMCG00006389
AMCG00006386 mRNA upstream 163330 3653239 ~ 3668931 (+) True AMCG00006386
AMCG00006393 mRNA downstream 18936 3858934 ~ 3864544 (+) False AMCG00006393
AMCG00006404 mRNA downstream 53265 3893263 ~ 3896458 (+) True AMCG00006404
AMCG00006410 mRNA downstream 79906 3919904 ~ 3920782 (+) True AMCG00006410
AMCG00006409 mRNA downstream 81236 3921234 ~ 3921928 (+) True AMCG00006409
AMCG00006408 mRNA downstream 82423 3922421 ~ 3924520 (+) True AMCG00006408
TU136960 other upstream 191600 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 232564 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 258552 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 325582 3503181 ~ 3506679 (+) True G109362
TU136837 other upstream 466696 3361354 ~ 3365565 (+) False G109309
TU137096 other downstream 19275 3859273 ~ 3863270 (+) True AMCG00006393
TU137156 other downstream 123599 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 312818 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 319525 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 636936 4476934 ~ 4477570 (+) True G109714

Expression Profile