RNA id: AMCG00006397


Basic Information

Item Value
RNA id AMCG00006397
length 3105
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00006397
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3839048 ~ 3847723 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTACAGCGGGTCGGGAATTTtaatagagggagagagagggagggagggagagagaaagaaagagagaaagacggTTAGCggggagagggaaggaaagaCGGAGCGGAGAAAAGGAACACAATCCCCGTTGGCTGTTGCAAATGTCTGCCATCGGAGCAGCGGACTGGGTCGCCGGGCCGCGTTAGAATTGCAGCCggaggggggggagaggaaATGGGCGTCGGGGGAGATCTAGCGCGATACTGACACCGGCGACGGAGCAGAGGaaagggggaaggagagagcaagagcccagcagagggagagagagcctCCGCCCAGCACAACGGAGACACGTCTTCACCAGgttCATGGCAGTGGGTTAGACGACACCAggcctccctctctttcccttccctttcccttttttttttttccttcccttttccCCCACCCTGTCCCCCATTTTTTTTGTCCTCAATTACATTATTCctcgatttttcttttttctccggTCTCTCATCACCCCTTCCCCACTCCCCCCCGTCCCTCCCTGACTCTGATTGGCCATGGTGCGCAAGAAAGGCTCTGTCATCCTGTGCGGGGCCCTCCTGTTCATCGCCTGGAACGCCTTGCTCCTGCTCTTCCTGTGGGGCCGGCCTCCCATTGGCCGGCTGGGGCCGGGCGGTGGTGGGGCGGAGCCGGGAGAGGGCCGGGAGTGGGGAGAGGGCGGGGACCTGACGGGGGAGGTAATGCGATTGGCCGAGGAGGTGGAGAAGGAGCTGGAGACGCAGCAGGTTCTCCTGCAGCAGATCCAGAGCCACCGGGCGCTGTGGGAGCACCGCCAGGGCAAGGGCCAGGCCAAAGACAGCCAACGCTTGATTGGCGGAGGCCTCTCGGACCCCAGGAAGGCGGGAACGCGGGCCCCCGGGGCCTCCGTGGCTCCGACCGCCCCCGACTCGGACACGGTCATCCCCGTCGTGGTGATCGCCTGTGACCGGGTCACCGTGCGGCGCTGCCTGGACAAGCTGCTGCAGTACCGGCCCTCCGCCGCACTGCACCCCATCATCGTGAGCCAGGACTGCGGCCACGAGGACACGGCCCGTGCCATCGCTGCCTACGGGGAGCGCGTCACCCACCTGCGGCAGCCCGAGCTGGGGGACATGCCCGTGCGGCCCGAGCACCGCAAGTTCCAGGGCTACTACAAGATCGCCCGGCACTACCGCTGGGCCCTGGGCCAGGTCTTCAATACGTTGGGCTACAGCGCCGCAGTCATCGTGGAGGACGACCTGGAGGTGGCCCCAGACTTCTTCGAGTATTTCCGTGCCCTGCTGCCGCTGTTGCGCCAGGACCCGTCCTTGTGGTGCGTGTCCGCCTGGAACGACAACGGGCGGGAGGGCGTGGTGGACGCCGGCGCGCCTGAACTGCTGTACCGCACCGACTTCTTTCCCGGCCTGGGCTGGATGCTGCTGCGCGAGCTGTGGGCCGAACTGGAGCCCAAGTGGCCCGCAGCCTTCTGGGACGACTGGATGCGGCAGCCCGAACAGCGCCGGGGCCGGGCCTGCCTGCGGCCCGAGGTGTCCCGTACGCTGACCTTCGGCCGCAAGGGTGTGAGCCTGGGCCAGTTCTTCGACCAGTACCTGCGCTACATCAAGCTCAACTCCCAATTTGTGCCTTTCACCCGTCTGGACCTGTCCTACCTGGAGAAGGCCGCCTACGACCGGACGTTCGAGGAGAAGGTGTACAGCGCCCCCCTAGTGCGGCCCGAGGAGCTCACCCAAGGGGGCGGCCAGCTCCGGGGCACCGGGCCCTACCGGGTGCAGTACTCCAGCCGGGACTCCTTCAAGGTGTTCGCCAAAGCCCTGGGGGTCATGGACGACCTCAAGTCCGGGGTACCCCGCGCAGGGTACCGGGGGGTGGTCAGCTTTCTGCACAAGGGTCGCAGGGTCTACTTGGCACCCCCGCCTGGCTGGAAAGGCTACGACACCACCTGGAGCTAACGCTGGGGACGGGGAgggcgagagagacagagagactggtATAGGAGAGTCCTGGGGAGCATCTGAGACACACGGGCAGAGAGAGTTAGACTGCACTGGGAGAAAGACACAAAGAGGAGGATCTCGAGTACCATCTATAGCCGATGCTGGCCTCACAGGCTGGAGTTAATGCTGTCAGGGTGAGACTGAGCCAGAGGCTGGAGCAAAtgcaggcagagggagagggaggaagagggccTGGCAGAGGTTCTGGGCAGCATGTGAAGCTGGTACTGGGACggacaggagagagagtggagagaTGCTGGCTAGACTGTGACTGAGCAAGAGACTGCAGGGGAATGCTGGCAGGCTGGAGTGAGTGAGACCCCCAGACGGCAGCTGTACGCGAGATGGGTTGGCAGGCCACTGACAGACCTGCACCAGGAGCTCACGTTGAGAGACTGAGCGCAAGAGAGAGATCCAGCTCTCCGCAACACTACGACAGCCCTATGCGCTACACGGCAGTCTCCGACCCACACTGCCCGGAGCTCGGGCCGCATCCGTGCACTACTAGTACCTTCACATCAGTCCAGTCTAGCCCGCTCCGTCCACTGCAGCCCAGTCAGTTCGCTATAGTCCAGTACAGCTCAGTCCAGCCCAAAGTCTCTGTCCGTGTGGATGGAAGGACCCTCAGCGTGACGATGTTTGgattaatcaatattaattcaTCTTTCTTCAAAAccaatgattttaatttaatttttttccatgattgtttgctttttctatGAAGGGGTTATTATTCTGGGACAGGGCAGAGTTGATTTGGttgtgtaaaaaagaaaaaatatacatatataaatatatattaaaaagtataataattttTAATCACTACTTgaatttttccatttatttttctgactgATTATTTTTGATTCGTTTGCTGTTCCTCTGAATGCTGAGAGAAAATGGACATTTGAAATCATTTCAGTCAGACGCCTTTTGGAAACCAATCTTATTGCTgtaattatgatgattattgtttttaatgttttttttcaatggtGAAGATGAAATGTAACCACTGCCTGGGTTGTTTATAAAATTTAATAcgaaggaaataaaaaaagattattttaa

Function

GO: NA

KEGG:

id description
K00726 MGAT1; alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137095 lncRNA downstream 4625 3826510 ~ 3834423 (-) True G109483
TU137079 lncRNA downstream 31261 3805656 ~ 3807787 (-) True G109472
TU137060 lncRNA downstream 38925 3730042 ~ 3800123 (-) False AMCG00006398
TU137050 lncRNA downstream 124269 3698885 ~ 3714779 (-) False AMCG00006390
TU137017 lncRNA downstream 183925 3586596 ~ 3655123 (-) False G109439
TU137130 lncRNA upstream 18997 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 128480 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 128986 3976709 ~ 4035331 (-) True G109609
TU137260 lncRNA upstream 234084 4081807 ~ 4083452 (-) True G109619
TU137272 lncRNA upstream 291311 4139034 ~ 4139269 (-) True G109628
AMCG00006399 mRNA downstream 15075 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006398 mRNA downstream 23531 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006401 mRNA downstream 60544 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006391 mRNA downstream 96767 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006390 mRNA downstream 110529 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006400 mRNA upstream 641 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006402 mRNA upstream 26227 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006407 mRNA upstream 192771 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006406 mRNA upstream 202503 4050226 ~ 4056245 (-) True AMCG00006406
AMCG00006405 mRNA upstream 211035 4058758 ~ 4066143 (-) True AMCG00006405
TU136502 other downstream 1509057 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1708793 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1814905 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1957211 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2114200 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 317211 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2166381 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2937590 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3230666 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4874665 8722388 ~ 8724352 (-) True G110507

Expression Profile