RNA id: AMCG00006398


Basic Information

Item Value
RNA id AMCG00006398
length 4341
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00006398
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3730042 ~ 3815517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGTGCCCCCTTCTGGATGAAACGCAGGGAGTCCCCCACCAGGCACACCCCAGCCCTGAGAAGGTGGGTGGCGGCCAGGCTGAGGAAGAATGCCACCCGGAGGACGCAGGTCAACGAGTCGCCCAGCAGGAGAAGAGCCTCCAGGAGCAAGTGTCACCCACCAGTCTGCCACCCCCTCCAGTACGGAAGCTGCTCATCCGCCCTAGAGCCCCAGTCTCTCCAGTGCAGTCAGTGTCTGCTGAGATGGACGGGCTGGACAGCAGGGCGGCtctgctcctcttcctctGGTCTCATGACAATGTGTTCTGGGAAGCCTCTAAATGGTCCAGCCCTCATCTCTCTCCCGTGTGGAAGTCCTCTGCACCGTCTATCAGTCTGCGGATCCAGAATATCACAGAGACAGACCTGGCGCTGTACTACTGCGCGGAGATTGATGGAACAGAGCTGACGTTTGGAAATAGAACCAGGCTCGTCTATGAGGGTCAGAAGGACATCAGTCCCCCTGCCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGTGTCGGTGAGAGTCGGGGACTCTGTCACTCTGCGCTGTGATGGATCAGCCTACAGAGGGACTCCTATAGAGCAGACATACATTAAGTGGGAGACGGATGAAATCCCTGTTTATGAGTTTATCTATGGCAATTCCACCCCTGGTCCTGGGTTTGAGAACAGAACTGAGATTCCTCTGGAAAAGATCCAACTGGGGGACTTCTCCCTGATCCTCAACCACACACTGTCCTCTGACCAGAGGTTTTATAGGTGTTCCCATCAGAGAGGAAGTGAACGGGGCAGTTCTCTTGGAAGGGTTAATCTCACTGTTACAgGCCATGAGGAGAGCAGCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCAGCTGTGACAGTGTGGTTTAACCCTGCGGGCGCTGGAGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCCGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGCTCACACTGCAAACCTCACTCTGCTGTCTGGAGCCTTGCTGTCTCTCCCGCTCCTCTCTCCTGGGCCAGTAGAGGTGCTGTTTGCTTCTGCAGGAGAGGGAGCCTCTGTCTCGGTGTGCACTCTGGAGAGGGACACAATGTTCAGTCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCTTGCGCTCACTCACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGACCTGCAGGGGGACACAGTCAGCaccgtctctgtgtctctggaaGATGTTGGACTGTCCTCCAGTAATGTGGCTTGTATAGTTGTTGGAGTGCTGCTGTCCGTCTGTGGTGGTTTTGTGCTATGcgtatacattttgaaaaaacgGGATGGCAATGGTGCATACTAAGATGCAGCAGATGCAGCAATCCACCGAAGTTGCGTTGTAATTGGTTCTGAGACTGGCGACATTAGTCAAGACTGCTTTTCCCATAAACGCAATGTTTAAATGGAGAGCGTGGTTCCAGAAAATCTATtttgacaaatataatttctgaaaaatttacaaaatatgaaatctgaCCATGACAATTTAGCCGACTGTGTAATGAAGCTCTGGGCAGTGCtgccagaaataaaaatacacaagtaGCACCAAACCAacccaatatatttatttgagaaACCCAAAGTAAATCCATATGTGGCGTTTCCACCCTCCACTACATTTGTGATTTAAACCCAGTATTTCGTTCTTTCATGTCAATATTTTTGCATTGAAACAATTTACCCATAgttgtattaaaaatagaacttgataaaaccatttaaatccTTTTATGGAAGCTTCTGAAGAGTGAACCAACTTTCTAAATTAGAGCGCAGGTAGGTCTAGGTAGGTAATTCAGTCACCCACTACACTCTTGTGAGGCAAACCAATTGAGCCATGTGTTCACAGatgcatatataatatagatCGATAGGCATTAGCCAGCCCAATGGACTCTCGCTTTGcctaaataaatgtacagtattttttcaatCTGAGGCCAGAGATCAAGAGCACTTGTCAGCAGCCAATGGAGACCAGACCGTGGAAAGCACAGGAGAAATTCAGCCAAGAAGATGTGAACATAAGAGCAAGTATTAGCATAAGGGAAGTATTACCAACTTGTACTTTGCTGTTGTAGATAAGTTCTGAGTATGTTACAAGGATGGGTTTTGCACGGTTATCCCATTATCTTATTCATGCCACCATCAGTAAGCTGATCACAATCTTCTTGCATCCAGATGCAGATGAGGCAAATCCACTACACTACAGAGGGCAGAAGAGGCACATCCACCACCCCCGAAGAGGGCAGACGAGGCACCGGCACATCCACTACCACACTCCAGAGGGCATACAAGGCCATCCCAGAGGGAGACCACAGACCTGTATTGAATTGttgtacatgtttatatatCCAAATGTGAATCACAAAGGCAGACCTAAAGGTTTTCATGGTAATTCCTTTAGCAGTGTAAAATACCTTCAATACTGTCATACAGATCTAATTTTAAAGAGGTACTTGTGTTATCGAAGGCAacagttggaatgaaaacctcaAACTACTGTGGGGAAAACGCTGCACTTGGGCTCAGAGGTGTCCaggcctggtcctggagagccctcAGTCCAGCTTGTGTTATTTTGATGTGACTTTGAACCAGTACTTGAAAAGAGAGACCAGTGTTTTTACAGATCAAGTGAgtcttaattgatcaataaccaTAAAGGTCAATAAAATGTTCCGCGGGCTTTTGAAATAGGAAGTTTAGGGTGACCTGTATAATTTACTCGAATCGGCATTTCCAGCAACTACATCTGAATTCTAGAGAATGCACTGCTCTATTGTTCTCTAGCCACGTATTGAACATACAAAATTAACGGTTTCTTCATTATTGCTAATTTGGGACTACCAAAGTTCACTACAAAGAAATGTATTGGTTGGGGAAAATAGGTTGTATATTGTTTGTAATAAGATTTCCATCTTGTTTTTTCCATTCTAGAAGATTAGGAAACTGAAGCTTTGAACTCTGTCCTTATGTGTTCTTCACCTTAgaacataaatgtataactaaATATGCTAAACTCAAGCCTGTTGTATATAGTTTGTAACTTAATGTTTCCACGTTTAAACCTTAGGCTTGTCTGTTTCATATCCAGTGTTAATTTAGTAATCAGTTTGATTTAGTTGTTTTGATCAGGTCAACTAAAATGTCTGAGATCTAGGgtgcattttcatgttttgaccAACCCACAATTAGCTATTAGTATTAGATCTAGGAGCTATGACTTTATCTACCCTTCTGTAAATTTGAAACTACTTGTATTGTGCTtgaattgtaaatattgtactgtattattgcacttgcGCAATGCTCTGGTATCCTCTAAGTTGCCCTGCAGAAAGGCCTTTgccaacaaatacataatgaacCAACCTGTTGGGTATGTTACTGACTACGGTCAgacattatatatgtaaatcatGCAAAATCTCGATCTCTACAAATAGACATTAGCCTGGATTAGATTGTATACTAAAGGTAGTTTCAAgcaatttaattgtgttttatggcagtaatgttaaaaaaaaaaaaaggtgtacaTACACAATATAATTACCCCATTTCTTAGCACCGACCCTGAGCTAGGGTGACATTGTTACAACCTCTTACAATCTTCCAATCCAGTGTCCAGAGCACTAACCACtattccacactgctgccatttgttatatatatattttttaacatttattagaAGTGATTTAACCTTGCTGCCACCTATGGCAAAACCCCACTCTATCCTACAATGCCTCTCATTACGTGACAATGAATTGAGAGCTGAGTCATGTACTGGATTCACGGGTTCAAATGATTTCTAAATGCTGTGCCCGCTGACcacactgcaaaaacacacaaccatacaacctgatGAACTGGGCATAGCTCGAATACACACCcatagtcacattttagtcatgcaattttctttatttttagtcttcCAAAATTATTCTAAAGTCTTTGTTAGTTTTAGTCTAATTACATTAGTTTTAGTCAAGCTGCTGTAAGACTTGTGGGTATTCTGGGCTACAGCAGGGATTTGAAACCTGTACACCTTACTACAGTAAACTTGCACTGTTGCTGCTTGTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137050 lncRNA downstream 68863 3698885 ~ 3714779 (-) False AMCG00006390
TU137017 lncRNA downstream 128519 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 128519 3586596 ~ 3655123 (-) True G109439
TU137003 lncRNA downstream 221698 3548614 ~ 3561944 (-) True G109432
TU136866 lncRNA downstream 414094 3367197 ~ 3369548 (-) True G109334
TU137095 lncRNA upstream 10993 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 51203 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 160686 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 161192 3976709 ~ 4035331 (-) True G109609
TU137260 lncRNA upstream 266290 4081807 ~ 4083452 (-) True G109619
AMCG00006401 mRNA downstream 5138 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006391 mRNA downstream 41361 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006390 mRNA downstream 55123 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006388 mRNA downstream 105225 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006382 mRNA downstream 218225 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006399 mRNA upstream 7398 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006397 mRNA upstream 23531 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006400 mRNA upstream 32847 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006402 mRNA upstream 58433 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006407 mRNA upstream 224977 4040494 ~ 4043227 (-) True AMCG00006407
TU136502 other downstream 1453651 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1653387 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1759499 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1901805 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2058794 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 349417 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2198587 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2969796 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3262872 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4906871 8722388 ~ 8724352 (-) True G110507

Expression Profile