RNA id: TU137060


Basic Information

Item Value
RNA id TU137060
length 966
lncRNA type read_through
GC content 0.49
exon number 4
gene id AMCG00006398
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3730042 ~ 3815517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNGCCGAGCGGCGGACTGTCAGAGCCGGGGACACCGTCACCCTGGACTGCGACATCACACatcagaaaaaaactatttggtTTGTACAGCGAGACGACGAGGCTCCGTTTCAGCTCATTTCGGCACATAAAATCGCAGGGTCTCATGACAATGTGTTCTGGGAAGCCTCTAAATGGTCCAGCCCTCATCTCTCTCCCGTGTGGAAGTCCTCTGCACCGTCTATCAGTCTGCGGATCCAGAATATCACAGAGACAGACCTGGCGCTGTACTACTGCGCGGAGATTGATGGAACAGAGCTGACGTTTGGAAATAGAACCAGGCTCGTCTATGAGGGTCAGAAGGACATCAGTCCCCCTGCCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGGTGGCGATCGGTGTGGAGGGGAGCAGTGCAGAGGAAAAGGAGCAGTGCAGGGGGCAGAGGTGGAGTCAGATTACGCCAACATACAGATTCACACAAGCCACACCTACGCCACAGACAGAACTGTGTATCTTCACCAGATCACAGAGCAGTCAAGggcaaaaataaattgtttttaaactgagGAAAATTACTGTCATGCTTCCACTGGATTGAAAACCACCACAGATGGAGaaccaggtttttttttttgcagtctttATCACAGCACcgtttgtattaattgttatttattggcTACAATCTGTTGTGAAACTGTGTCTTGTAATGTGTCTCTACAGAAGGTGACTGCTGtatttaacatgtttgtttaGGGGTCAAGTGGGTGTGGTCTGAGATTTTTGTGATCGATGTGCCCACTTTGTCGCCTGTGCTCACCGGACGTTTTCTGTGGTTTCCCcattttattctttgttctaTTCTGGTTAGTTGTTTCTCAACAAGTTTCCTATGCTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137050 lncRNA downstream 15263 3698885 ~ 3714779 (-) False AMCG00006390
TU137017 lncRNA downstream 74919 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 74919 3586596 ~ 3655123 (-) True G109439
TU137003 lncRNA downstream 168098 3548614 ~ 3561944 (-) True G109432
TU136854 lncRNA downstream 296772 3340118 ~ 3433270 (-) True G109322
TU137079 lncRNA upstream 5533 3805656 ~ 3807787 (-) True G109472
TU137095 lncRNA upstream 26387 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 66597 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 176080 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 176586 3976709 ~ 4035331 (-) True G109609
AMCG00006390 mRNA downstream 1523 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006388 mRNA downstream 51625 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006382 mRNA downstream 164625 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006381 mRNA downstream 206023 3515708 ~ 3524019 (-) True AMCG00006381
AMCG00006380 mRNA downstream 214834 3506311 ~ 3515208 (-) True AMCG00006380
AMCG00006399 mRNA upstream 22792 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006397 mRNA upstream 38925 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006400 mRNA upstream 48241 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006402 mRNA upstream 73827 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006407 mRNA upstream 240371 4040494 ~ 4043227 (-) True AMCG00006407
TU136502 other downstream 1400051 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1599787 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1705899 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1848205 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2005194 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 364811 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2213981 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2985190 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3278266 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4922265 8722388 ~ 8724352 (-) True G110507

Expression Profile