RNA id: AMCG00006399


Basic Information

Item Value
RNA id AMCG00006399
length 357
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00006399
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3822915 ~ 3823973 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTGCTTCCACGGGGACCCAAATTTCTGCCCCGAGTGCGGCACCGTGCTCCCGATTCCCGGCATGGAGGACACGGTCACCTGTCGCCGCTGCTCCTACAACATCAGCGTGACGGAGTTTGCAGATGTCACCATCACGTCCTCGGTGGTCTTCAACAGCCTGGAGGGATCGTCCACCACCATGGAGGCCGAGGAGGGAGGAGAGCTGAAGGGCCCTGTGATTGACAGGAAGTGCTCTCGCTGTGGGCAGGAGGGCATGGTGTATCATACCCGGCAGATGAGGTCTGCGGATGAGGGACAGACAGTCTTCTACACCTGTATGCACTGCAGgtaCCAGGAGAAAGAGGATTCCtga

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03000 RPA12, ZNRD1; DNA-directed RNA polymerase I subunit RPA12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137079 lncRNA downstream 15128 3805656 ~ 3807787 (-) True G109472
TU137060 lncRNA downstream 22792 3730042 ~ 3800123 (-) False AMCG00006398
TU137050 lncRNA downstream 108136 3698885 ~ 3714779 (-) False AMCG00006390
TU137017 lncRNA downstream 167792 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 167792 3586596 ~ 3655123 (-) True G109439
TU137095 lncRNA upstream 2537 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 42747 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 152230 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 152736 3976709 ~ 4035331 (-) True G109609
TU137260 lncRNA upstream 257834 4081807 ~ 4083452 (-) True G109619
AMCG00006398 mRNA downstream 7398 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006401 mRNA downstream 44411 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006391 mRNA downstream 80634 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006390 mRNA downstream 94396 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006388 mRNA downstream 144498 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006397 mRNA upstream 15075 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006400 mRNA upstream 24391 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006402 mRNA upstream 49977 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006407 mRNA upstream 216521 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006406 mRNA upstream 226253 4050226 ~ 4056245 (-) True AMCG00006406
TU136502 other downstream 1492924 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1692660 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1798772 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1941078 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2098067 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 340961 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2190131 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2961340 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3254416 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4898415 8722388 ~ 8724352 (-) True G110507

Expression Profile