RNA id: AMCG00006400


Basic Information

Item Value
RNA id AMCG00006400
length 2834
RNA type mRNA
GC content 0.58
exon number 23
gene id AMCG00006400
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3848364 ~ 3858917 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTCTGACACTCACGCTGCACTTGTTTCTGGTTGACAAGCGTGCCGTGCGTGAGGTTAAAGGTTGAAAGGAAGATGGCGGCGCCCTGTATGCCTTCCTGATTGTGTGCAGCGGAGTAGAACACAGCTATGTGGCGCCCAGTTTGCTGTGCCCCAGTGGGAGTGGGCAGACTGGGGCTGCTGCGGGACCTGTGGGGGGCCCGTGGGGGTGTCTGCAGACTCTGTAGCAAAGATTCTGGgaccaccccccctccccctccccctccccctccttcacTGAGACACCGTgctgagaaagagaggagacggagagagaaggagagagccATCCTGACACACTGCGGCACTGAcactAGCCGGCTCCCTCAGGCTGTGGAGCACACCTTCTCCCTGTGTATCCCTCCACCCAATGTGACCGGATCGCTCCACCTTGGCCACGCCCTCACCGTGGCCATAGAAGATGCACTGACCCGCTGGCGGAGGATGCAGGGCTATCGGGTGCTGTGGGTTCCAGGCTGTGACCACGCTGGCATCGCAACCCAGgcagtgGTGGAGAGGAGGCTGCTCAGAGAGAGGGGGTTACGCAGACAAGATCTTAGCAGACAGCAGTTCCTGGAAGAAGTGTGGGACTGGAAGAAAGAGAAGGGAGACGAGATCTATCTGCAGCTGAGGAGACTCGGGGCCTCTCTGGACTGGAGCCGGGCCTGCTTCACCATGGACCCGGGGTTCAGTGCTGCAGTGTCCGAGGCGTTTGTGCGTCTGTTTGAGGCTGGACTGATCTACCGCAGCGAGCGGCTGGTCAACTGGTCCTGCGCCCTTACCTCCGCCATCTCCGACATCGAGGTGGACAGTGTGCAGCTCAGCGGCAGGACTCTGCTGTCTGTCCCCGGGTACGAGGACAAGGTGGAGTTTGGGACCATGGTGACATTCGCCTACCCCTTAGAGGGACAGGATGGAGAGATTGCAGTGTCTACCACTCGTCCAGAGACGATGCTGGGTGACGTGGCGATCGTTGTTCACCCCGATGATCCCCGCTACCAGtctctccaGGGCAGTGTGTGTTGTCACCCCTTCACTGGCCGTCTGCTGCCCATCCTGACTGACCCCATAGTGGACACACAGCTGGGCACTGgggcaGTAAAAGTCACTCCCGCTCACGATCACACAGACTTCCAGCTGTCCCTGCGACACGCCCTCCCACGGCTCTCTGTGATTGGAGGAGATGGCACCATGAACGAGCTGTGCGGCAAATGGCTACAGGGTGTGCGGCGGTTCGAGGCGAGGGGGAAGGTGCTGTCTGCGCTGAAGGAGAGGGGGCTCTATAGAGGCACGGTGGAGCACCCCATGACCCTGCCAATCTGCAgtcgTTCAGGGGACGTGGTGGAGCCCCTGTTAAGGAGTCAGTGGTTTGTGCGCTGTGAGGCGATGGCACAGAGAGCCATGCagGAAGGCAGCGATGCATTGTGGGTGTGCGGGCGGAGCTCAGACGAGGCCAGGAAGAAGGCCGCACAGAAATATGGGGTATCCAGATGTGCTGGACACCTGGTTCTCATCTGCTTTGTTTCCATTCGCTATGTTGGGCTGGCCAGAccagATCTGCAGAGGTTCTATCCCAACAGCCTCCTGGAGACAGGAAGTGACCTCATCTTCTTCTGGGTCGCACGGATGgtggTCCTCCACTCCATGGTGAGGGATGCTCATGGCCGGAAGATGAGCAAGTCTCTAGGAAATGTTCTCAGCACGCGTCACTTCTGTAACAAAATCTGGAATGCCGTCAAGTTCACACTGGGAGCACTGGGAGAAGACTTCACCCCCCTTCCGCTGACCAAGgtcagtGTGCAGGGCGGTGTGGACAGGTGGCAGTGCAGCAGACTATACAGCACGGTGCTGCAGTGTGACCAGGGCTTCCAGCAGTTTGAACTGCATGCTGTCACTGCGGCCGAGTGCGTTAAGCCGGTGCTGTCCGGGGATGGCAGTGCCAGGGAGGCGGCCCGCCAGGTGCTGTACCACAGTGTGCGGCAGGGCCTGGCCCTCCTGTCCCCCTTCATGCCCTACCTGATGTGGGTGCAATGTTCGGGCCCTCAGCAGGCGGCAGCGCTGGAGCACTTCCTGTCCGCAGTGCAGACTCTCTCGCGTGTCGGGGCGCTGCGTCTCCTCTTGCCAGCGGGGGGCGACCCTTCCCCCCCTTCAGGCTGTGCTGTGGGAGTGGTCAACGACAGCTGTCAGATACACATGCGTATCCAGggcagtGTTGATGTCCAGCGGCAGTGCGCGACACTGTCTCAGCGCAGGAACAAGCTGGCCTCTCAGCTGGAGGAGGCCGTGTCTCGAACCCAGGCTCCAGAGTACCAGGAGAAAGTGCCTGAGAGAGTGAGACTGGAGCACACGCACAGGATCGCTTCTCTACGCTTGGAACTGCAGCACACAGAGGAGCAGCTTTCGACATTACAGCACCTAAAGACAGAGGACCGATAAAGATTGTTTGAGAGTGTATTTCAATACTCAGGGGGTGTTCTGCCTGGCTGCAGTCCCCACCTCTGAACACACAGAGGCGCCGATTTCCCACAAGAGAGGCGAGCTGGCCAGGAAGAGGCGAACGAGACACACAGTCTTCAGTCCCGCTGCGTGAGGGCGACAGCCACGGAAACAAACCTGGACATGAAACAAAACTTTTACTACAACTACTGCTGTAAAGTCTAAAAAGCTGGTGATCAACTCTTCTGAGGACACGCGTGggaaaataaagtacaaattatGTCAACCCAGAACAAAAATCATGAGCTATATgtgacacttaaaaaaaataaaatctaaggGCATCTGGGGTGGCTGTCT

Function

GO:

id name namespace
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137095 lncRNA downstream 13941 3826510 ~ 3834423 (-) True G109483
TU137079 lncRNA downstream 40577 3805656 ~ 3807787 (-) True G109472
TU137060 lncRNA downstream 48241 3730042 ~ 3800123 (-) False AMCG00006398
TU137050 lncRNA downstream 133585 3698885 ~ 3714779 (-) False AMCG00006390
TU137019 lncRNA downstream 193241 3586596 ~ 3655123 (-) True G109439
TU137130 lncRNA upstream 7803 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 117286 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 117792 3976709 ~ 4035331 (-) True G109609
TU137260 lncRNA upstream 222890 4081807 ~ 4083452 (-) True G109619
TU137272 lncRNA upstream 280117 4139034 ~ 4139269 (-) True G109628
AMCG00006397 mRNA downstream 641 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006399 mRNA downstream 24391 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006398 mRNA downstream 32847 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006401 mRNA downstream 69860 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006391 mRNA downstream 106083 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006402 mRNA upstream 15033 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006407 mRNA upstream 181577 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006406 mRNA upstream 191309 4050226 ~ 4056245 (-) True AMCG00006406
AMCG00006405 mRNA upstream 199841 4058758 ~ 4066143 (-) True AMCG00006405
AMCG00006419 mRNA upstream 230383 4089300 ~ 4090132 (-) True AMCG00006419
TU136502 other downstream 1518373 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1718109 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1824221 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1966527 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2123516 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 306017 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2155187 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2926396 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3219472 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4863471 8722388 ~ 8724352 (-) True G110507

Expression Profile