RNA id: AMCG00006401


Basic Information

Item Value
RNA id AMCG00006401
length 540
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00006401
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3776066 ~ 3778504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGCACTGACAGTGCACGAGTTGTCGCCCAAGAGAGAAGAAACGCAAATCTGCGCAACCTTGTATCAACTGACCGTCTCCTCAGATCCTGTCTCAGTGTCAGTGAGATCTGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCCTACAGGGGGACTCCTGAAGACCAGATCTACATTAAGTGGCAGACAGTGAACCAGAGAGTCTATGAGTTTGTCTATGGAAAGTCCTACCCCGGCCCTGGGTTCGAGGACAGAGCCGAGATTCCCATGGAAAGGATCAGACAAGGAGACTTCTCCCTGACTGTCGACAACACCTCCTCCTCTGATGGAGAGATATACGAGTGTTTCTGTGAGAGGAAGGGGAGCCAGCTACAGTTCCTTGGCAATGTTCGCCTCACCATTGCAGGCCGTGAGGAGAGCAGCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCATCTGTGACAGTGCGGTTTAACCCTGCGGGCGCTGGAGCCTCTCTCCCAATTGCGGCACCGTGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137050 lncRNA downstream 61287 3698885 ~ 3714779 (-) False AMCG00006390
TU137017 lncRNA downstream 120943 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 120943 3586596 ~ 3655123 (-) True G109439
TU137003 lncRNA downstream 214122 3548614 ~ 3561944 (-) True G109432
TU136866 lncRNA downstream 406518 3367197 ~ 3369548 (-) True G109334
TU137079 lncRNA upstream 27152 3805656 ~ 3807787 (-) True G109472
TU137095 lncRNA upstream 48006 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 88216 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 197699 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 198205 3976709 ~ 4035331 (-) True G109609
AMCG00006391 mRNA downstream 33785 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006390 mRNA downstream 47547 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006388 mRNA downstream 97649 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006382 mRNA downstream 210649 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006381 mRNA downstream 252047 3515708 ~ 3524019 (-) True AMCG00006381
AMCG00006398 mRNA upstream 5138 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006399 mRNA upstream 44411 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006397 mRNA upstream 60544 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006400 mRNA upstream 69860 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006402 mRNA upstream 95446 3873950 ~ 3878042 (-) True AMCG00006402
TU136502 other downstream 1446075 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1645811 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1751923 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1894229 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2051218 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 386430 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2235600 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3006809 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3299885 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4943884 8722388 ~ 8724352 (-) True G110507

Expression Profile