RNA id: AMCG00006402


Basic Information

Item Value
RNA id AMCG00006402
length 3700
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00006402
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3873950 ~ 3878042 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatcGATTCAGTGGCCATAATGAAGGTCTGCACGTCATTCTCATGATCATTCGTGTATGTGGCCAGTTTCCGCACATGCTGACGTGAGACGTTTGGcaagatctgtgtgtgtggaggcaTCACACATATGTGCGCTGGCACCATTCGCTCTGCGTTTCAGGGGAAAGAGGCTGCCAGCGAGCTGCGTCATCCCGACACCGCCGCGGTCTGGTTTCGCCCGGATCCGAGGGGTACCGCGACTGACAGCTGCGAGTCCAATCCTCGGCCCGGACGGGCTGCCTGAGCCGGCCAATGGGAACCCAGACCCCGCTACCCCTTTCTGCCAGGGCCCGCCTATTCGTTTAAAGTTTACCCCTTCAGCTGCCCCTATGGGGGGTGTATTTACTGACATAGCCTCGGTCTTagtaaagtaaatgtattttactagaGCCGTCAGTTTATAGTTTCTGCCCTTTTGTCCTTATCTCGGGGTAAGTGTTAAATGTTGCCGGACAGCTGCGTCTGTTACAATGGCTTCTGCTCCGTCCGCCTCGGCCCGGGCTGCTGTCATCCGCTATCGGGGGAACCTATTCGGCAGGACACCAGCTAGCAAGCCGAGGCCTCCCTCCGGCAGCTACAGCCGGGGACTCGAGTACGGAGCGGCGAGGGGGACAGACCCGCCTCGGCGCGGCAGCGGGCTGTGCTGGCAGTGGGGAGGCGCTTTTCGGGAATGGGGGCAGGGGGTTTTCAGGGACCTGTCGATGGAGCTTCGAGGGGGCTCGCTGGCGGGGTGCAAGTGGCAGGTCACCCGGGGGAAGAAGCAGCAGCCCAGAGGGAAGAAGGCACTTTGTTCCGGACAGCCGCCTCATCCCAGGACTGCTGTCGGACTGGCCGCCGAGCCGAGGGTGAGCCGGGCCGAGGCCGAGCAGTGCCGCTGCCTGCGCGTCTGGGGGAGCTTCCGCTCGGTTTGGTGCCTGGTGGCTGGAGTGAACAAGGGACTGGGCTCGGTGTGCGGACGGACGGGTGGCCACGAACAGCTGGAGTCGAGAAGCAAGACTGTTTGCCTCCCCGCCCCCACAGTTTGGGCTCCGAGACCGGTTTTGCGAATAAGCTTTTTAACATCCCCGTCGGAGGACAGAGCCCGGGACCCTCTGCTGTGGGGCCGGCCCGAGTGGACTGCTCTGAGGAGAGGGGGGCTGCTGTGCACCGAGGTCGTGTCTGAAATGCTCCGGAGGAAACTGGGGCTCTGGTGTCGGCGTCTCTGGGCAGGACCGGGCGAGGTGGCCGCCGGCGTGGGATCCgccgccgctgctgctgcctcacagccgGGAGATGCGGAAGAGTCGGCTGTCCCGGCCGGGCGTGGGAGCGAACAGAAGTGGGACAAATCCTCCGCCTTGTCCATAGCGGCCAGAGACGACGGGCAGCCGGCGACCCCTGTTGAAGAGGTGGGCAGTGTGTCCGGACAGAGGCAGAACTGGCCCTCGGCTCTGGGGCAATGGGAGGCCGGCCTGGCAACCTCCACTGAAGCCGGAGAGAACAGGGAGCAGAGccagacactgcagcccaggGCAGAGACACTGAAGTCAGGGAGGAGAGCTATGACAGTGGGCAGGCTGGACTGAGACCTTTCACTACAGAGCATGGCAAGGTGTAGCCCAGGGGTGACTGAGCTTCTCCAAGGTCCTGGTTCTACCAAGCTGGGGGGAATCATGTCCATTTCCATATGTGTTTTCACACCCCTGTGTCGCTTTTGAAAGTCTTATTGGCTCTATATCATATTGCCAAGTGTTACCATTTAGAACTTAAAAAGCTGGTTATATTTAAGACCTGTACACTAAGGTGATCTGCTGTTTCTGGTTGTGGAGTTGGAAGtataaaaacattgtgtaacCTTGAGAGAGCCTTCAGATCTGTCCAGTTAAATCAAAGCCCTGTGTTTATCAACTGTTGAGTGTCCACTCATAATGATGGTTGGGCCCAGCGCTGGCTCCAATCTGGGCTCTGTACCATATAGTCCATCACAACATCACCCCTTCCCTCTAACCAGGCTCCAATGCAGAATAACACATCCAGAAGGCATTGCATTGTGGGAAGAGTGTGGTCTGCTTCCACTGCCATGTCTTTTCCCACCATCTGTCCTGCCATCTTGAAGGGCCCGATGCACAATTGTATAGGAACGGACTTCAGGACACCTTAGTGGTGTTTTAATTCTATACAATGTTCTAGAGCCCTTAATACTTTGTGGTGGGAGCCGATGTGTGAGACTctgaatagaaagaaagaaatgctgCTTGCATGAGCTGTCACTGCCACGACTATATCGATTGCACACGTAGAGTTTGTCACTGTGATTGGAGGAgggataattaaaaaaaggctgCACCCGGTTCACACATTGAGAAAGATCCTGTCCTGCCTACAGTGTAATGAAGTCCACACTGGCACTGGGTGCTGGGGACGTAGTGTATTGTAAAGTCCTGTACATGGTTCATAGTGTACCAGTTGAGGTGATTCCCAGGCACAGAATGGAAGAGAATGCTTTgaaaggttttcattttgagatttctggttttgttcactttttaatttccaCCAAGTAGCAGTAGGAGAGGCAGTACTAGtagtattaaaattaataaaacctgcACAAGGCAAAGTATGCTCTTCTGCACTCTTGTATGTTTTGTGCTCCTGGTTTACTGTGTCGTCTCGAGCTGGACATCTGAGGTCTGCACTGCTTTAGCCCTCAGAGTCACACTGTGTGTAGAACTGTTTAGTAATGTATCTATTGGAGTATTCAAAGGCAAAATCCCTTTataacattacaaagtgcaaaaagttataaaatgcaGAGTggattaacacaaaataaattgttatagaggaaagcaaaactgcaaagtAAAACACACTCTTAAAGCTAAGTGTTGATGTTATACACATATAATAGTTCTATGATCtcattatttcacattacacattttgtgTAGCTTTTATACAGTCTTGTGTTGGATAGCCTATTTCTCCAATGcagttaaaatgtgtttaactcCCAGATGCATTTTAAAGGGTGTTCTGACATATTGATAATCTACAGTAGTGTTTCTAAAGAATGCAGTTCTAAATTATtacatgtatatctatatatacatacatagatagacatttgtatatataaaacaacccGTTTTAAGATGAGCCCAGCATCTGTTGTCCCTCTTGAAATTGataaaagcttgttttgaataaatttgttttaatagcatAACTGCAACTGAAATAAGTTTATGATTACAATGTTCTTGAAAAGTCAGGGTATTCTGGAactaagtaaaataataaaaggctaATGTGTGACAACCGCGCAGTGCTGGTGATAAACGTGTGCAGGGTGCAGAGCAGAGAGCCGGGCCGGTGGATGCGTCGGTGCGGTCCTGATGTTCCCAGGTTGCTATTTCTGCCACATGGGGGCGAGGGAGGGAAACGGCACTGGGGAGAGATCGAGGAAGAGTAAgtgttgggaaaaaaatacacaacaaacttCACTTAGTGTAAATCacctttaaaattaatgtagtTAATAACTGTCctagttcattaaaaaaactaatgttTGTATAAAATAATCGGCCTAGAAACGGTGCATTAAAGCGGAGACTCGAATTTGtgattgtatatgttttaacagttaaatcttatccaaaataataaatcattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137130 lncRNA downstream 6909 3866720 ~ 3867041 (-) True G109514
TU137095 lncRNA downstream 39527 3826510 ~ 3834423 (-) True G109483
TU137079 lncRNA downstream 66163 3805656 ~ 3807787 (-) True G109472
TU137060 lncRNA downstream 73827 3730042 ~ 3800123 (-) False AMCG00006398
TU137050 lncRNA downstream 159171 3698885 ~ 3714779 (-) False AMCG00006390
TU137158 lncRNA upstream 98161 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 98667 3976709 ~ 4035331 (-) True G109609
TU137260 lncRNA upstream 203765 4081807 ~ 4083452 (-) True G109619
TU137272 lncRNA upstream 260992 4139034 ~ 4139269 (-) True G109628
TU137273 lncRNA upstream 274869 4152911 ~ 4153581 (-) False AMCG00006414
AMCG00006400 mRNA downstream 15033 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006397 mRNA downstream 26227 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006399 mRNA downstream 49977 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006398 mRNA downstream 58433 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006401 mRNA downstream 95446 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006407 mRNA upstream 162452 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006406 mRNA upstream 172184 4050226 ~ 4056245 (-) True AMCG00006406
AMCG00006405 mRNA upstream 180716 4058758 ~ 4066143 (-) True AMCG00006405
AMCG00006419 mRNA upstream 211258 4089300 ~ 4090132 (-) True AMCG00006419
AMCG00006416 mRNA upstream 221405 4099447 ~ 4108705 (-) True AMCG00006416
TU136502 other downstream 1543959 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1743695 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1849807 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1992113 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2149102 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 286892 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2136062 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2907271 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3200347 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4844346 8722388 ~ 8724352 (-) True G110507

Expression Profile