RNA id: AMCG00006405


Basic Information

Item Value
RNA id AMCG00006405
length 6654
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00006405
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4058758 ~ 4066143 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggagagggagagagagtgtgatggGAAAACTGGCAAGGAGACCCATGGCTGTCCTGGCCGTTCAAAAGTAGCACAAGAAATCATGCAAAAACCACTGGCGTTTTATCATGCTCTGTCTGATAAGGTTTCCGACAAAGAGGTGTTGAGAACTGCATCAGGGGGGTTGGCTCTACAGGGAATCTACTACACAGGGCATCTGGTGGACATGCTGGAGAGCAGGGAGCAGCTCATTGAGGTACCTGAGTCTTTCTCACTGGGGGATCCAGAGCAAAACTCCACCTTCAGGCAAAAGGAGTTTCTGTCCTGCTCTTCCCAGACTGCCTTCCAGGCTCTCGTGGAGAAGGTGGGTTTCAGCTTGAGCTGCCCCTCCGATGGGGGTGCAGAAGCTGGGGAACAGGTGGACACCACTGAAGATCACAGCTCTTCAGAACTCAGGGAAATGTTGAAGTCAGTATCTGCACAGACCAGCGTGTGGGTGACGAAGTACCATTACGTACCGCAGGCCACCAGCTCCATTGAAAAGCTGCAACTCAGGCTGTCCCACAGTGCTTTACAAGAGCTTCAGGTGACTGAGAGTCTTTTGTCCAACAGGAGGGATACCCCTGCCATCTTGACCAACAGAGTGAAAGTTTTTTTTGAGAGGTTTGGTTCGCATGTTAACCAGGGTCCTCTGCACTTTGGAGGGGTGTTCTGGTGGAAAGCTTCTGCTGAGGGCTTCCAGAGCACAAAGCTCACAGAGATGAGGAGTCTGATTACTGAAGCCTTGGACACCTATATTGGTGCTGACATTGAAAAAGCCTTGATGCAGCTGAACCGACAACTTACTAAAATTGACAACAACTCTCTCATTAAAGTGAAGATCTCTGCCAGTCACACTGGAGGTCCAGCCAACATGGAGAGTCACCTGCAGTGGAAGTCCCTTCTTGTTTCCAGTCGCAGAACTTGGAGTCTCACTGACAGAGGATCATCTCTGATACCTGTGTGGGACATAGTTCTGTCTAATCACAGGAGGGACTTTAAAGATGCTAGGCAGGAAGAAACAGCAGGAGAGCTTCGGGAGAGGATTCTGGTGGCGACATTCTGTGAGCGGGACCAGTCCAGCTGTGTGGCACACCTAACCTCACTGCTGGATATAAAGAGCAGACTGTACAGGGACACTGGGAATCACCACATATGGTTTAACACATACTTTTTGGACTGCAGCCTTCAAAGCTGCCTTGTGAAAACCATGGAAGAATGCATGTACTGTTCAGGGGAGGAGTCCAACGAAATCAAAAAGCTGATACGCAGACTTCTGGAGCCTGATCCATTTGCTGCAGTTGACTTTCCCAAAATGCTCTGTGTGATCAGGTGGGCCTATGCCTCGGAGAGAAACATGCGGGGGAATGTCTTTGCTCAAGATGTTCCTGAGCTGATCACAATTCTGAGAAAGGAAAAGGAACGCATAAAATCATCTGCTTCTGAGACTGAGCAGGAGACACAGATTGAAGCCACTGCTCTGATCacactgtcaatcaatcatctTCGTCAGATGCTGAGAATGAAACAACAGTATGAGGCTGAGATTCTTATGCTCTCAGTTGTGAGTGCTACCGGATACAGAATCAAAGGAAACATGTTCAGTCATCTATTAAGCTGGAAAGATATTGATTTCATGGAGAAACAGATGCTTCAATCCTATGAGAGATACTGCAATTTGAACCAACAAAGTGTGTCCAAAGCACAAGCCTACACTTTAGTGCAGACCTTGACAACAGCCAAAGACAGTGGCCCTGTTTCCTCTGAAGATAAACAGAAAcgtttagatttatttaaaatgtgcacagGAGACAGCATTTCAAGTGAAATCTCTGCAATACTGGGATGCTGTCAAAAGATATCGATAGACTGGGAAACTGCTGAGAAAGAATTAAAATCAGTGTATGAGAAGTGTGAACCTGTTAAGGAACACTTTGAGAAGTCCGTGTCTCATATTAATCTAGAAAATGTACAAGAACACCAGTTTGCCTCTGTTCCAGACACTAATTCTATGGTTGAAGTAGAGAACAACATTTCAAGTGAAATTACTGCAATACTGGAAAGCTGTAAAAAGTCATTGACAGACTGGGGAACTGTGGAAGAAGAATTAAAATCAGTGTATCAGAAGTGTGAACCTGTTAAGGAATGCCTTGAGTCATCCTTGTCCCATAATAATCTAGAAAATGAGCAAAAACACCAGTTTGTCCCTGTTCCAGCAACTGACTCTTTGGGTGAAGGGGAAAAACTCACCAAGCCAATTAAAACTGGTGAAGGTACTGGAACCAAAGTGAGGAAAACGGTGGAAAGATTAACAGGACCCACTCCGCTTATAAGGACAAGATTTGAAACCATCAGATCCCAGACTTTCAAGAATCTGCTTGTCAGACTGGGTCTCCTAAAATATTATCCCcaaaaattgagaaaaacaGACATTCTTGTAATTGATAAGCTGTCGTTGCAGATGAATCATCCCATCACAGAGGAAGAGCTTCCCTTTCATTACCTGTACAAACTTATGATGCTGGACTACAGGGCGAGGACCGTAGTTTGGAAAGAAGACAGGAAAACAACACATGTAGAAGAGCAGGGCCCCTCAGCTGGGGCTGGTGATGTAGACAGTGAAGATGAAGACTTTTTCAGTAATGAGACCAGACAGACCTGTGAGGAGACTGAAGACCAGCTGACACACATTCACCCCATGGATATCCACATGGCTGTGTTCCACTGCGCAGATGACTTTCTGAGGCAGTACCTCCTTCTTAAATATACAACCTGTCAGTATGCCTTGCCTCTGTTAATACCCCAACCATGCAGTGATACAATTGAATTTCCTCTCTGGGCTCTTAGGCAGGTGAAGAAGACCTGGGGCTGTAAAGATCTCTCGGAGAAGGACGGCTTCATCAAATGCAAGAACAGCCATGTGTTCAACACCAGTGTGCCAACAGTGTCCTTCTTAAGGCTGGGAAACTGTTCAGCCTCCAAATCCCAGATCCTGAATAGTGTCATTAGCAAGCAGAAGCACAACATCTTCTTCCACCGTCACTGCAGAggcagcactgcacactgccTGCTCATGGACGGTGTTGTGGAGATTGCCTGGTATTGTCCTGGAGGCAAGGAGGATGACATCTTTGATAATTGCTTGTCCTTCACCAATCTTCATGGTGATGCTAGCCAACTCCCAGCACAGGTTGAGTTTCTGCAGGAGGTCAGTGCTGTCAGTGTGGTTCTGATTTCAGGGTCTCTAAATGAAGCTGCCAGGAAGACCTCAGAGGCTCTATTGAAGTCACCTGCTCCAGTGATCTTCCTCTTTGATGACAACAGCATAGTCAGCCGTGGGAAAAACCCAAACAAGGTGAAACTGGCAGTCAGAAACAAGAATGAAGCTGAATTGGTTGATAGAATAATTTCCAACATCAAGTGCTTTGTCACAGAACAGTCTAACACTTCCAGTCTCAGTGAATTCCTATCTACGGCACGGAGACTTAGGTTTGACATagatgaaaacaatgaaaaatgcatggAAGGCAATGCGATAGCCAGTGCTGTACTCCGTTGGATAAAGGAGGAGAATCTGACAGCCGTGAAGGAAAGACTTTTGCCTTTGCAGGGCAAGCTTTGGTATGACTGGTGCACCAAAAACAAGGAGCAGTACAGACTGAAGGGCAATGCGAGCAAGAGCATTGAGCAGCAGctgtgtgaaattaaaaaagagaaaaaggtgATCCGGAGTGAACAGTTGAAGAAAGCTTTCCCTCTTAACGGTCTCATGAGATCTTTCCTGGAGTGTTTGGGCTCCTCATCGCTTTCCAGGGACACTAAAATGTTCATGCTACAGTGGCTAAGGACTTATCTGGATGATTTGACCACAGAAACCCTGTTGAAACTGGAGGAAAAATATCACACACAATGGACCGGGAtgagaaagaacaaaaacaccatAAAGAGAGGTGTTGAATTCAGACTGCAGAAAGAGTTAGATCTAATATCTGAGGAGCTCAATGCAGCCACTTTAGGGATTCAACATTTTTTTAGGGAAATGGGGCAGATCTATGAAGCGCAGCTGGACAATCGAGAGAGAATACCAAAGACCCAAGACTATGTTCACTGTCTTCCGGACATAGGAGCTGAAATGCTGATCTCAGGATACCCTCTGGAGCTTATGGATGGAGATGCTGCCCATGTGCCCCTGGAGTGGATCGGAGCTAATGTAGCAGAAACGTCTGCTGGGGAGAAGAACATGGAAGGCAGGAGGCGACTGCAGGAGAGACTGGACGAAATGACTCAGATCGCCGCGAAAGAGGAGCACTGTGATGTGGCTGCCTTCAGTGACATAATCCATTTTGATGTCGAATCTCAGGTGTTCTACTTCAAGAATCTTCTAGAGGGAGACCCTCCAATGGCTCCTCCGAACCCCTCCTACAGCCAGAACGTCCAGGAACTAAAGACCAAGATGCTCTCCATTGCAAAGTGGCGTCCAAACTGTAGGTTTTCTACACTGACTGAGTTTAAGTCCAGAACAGAGGACTTGTGGAACTCACTGTTGGGCGAAAACTTTGTGTTTAGCTTCAAGAACACCTTGGAGATGGTGGTGTACAGCAATTTAGAAAAGGCTTATGGAACATGGACTTGGCAGTTGAGAAAATGTGCCATAGAAGTTCAAAACAGACTGCGCAACCAAATcatgaataatataatacaggACATCCGTGCGTTAAACCACATGCAAGCATTTGATGAGACGTACCGCAAAATTACCACTGAAATAGAGAAGTATTTCAGTGAGGAGAAGCACTCCGGATTACTGATCCAATGGAGGGCCAATACAGAGAAGAGGCTGGAAATGGTGAAACATGACCTCACTATGGAAACTCATGACATGTGTGTGGAGCTCATCAGATTCAAGAAAAGTCAGTTTGAGTTGGACCAGAAGAAATCCAAATATGAGGCTCAGCTGCTCACTAGGAGTAAAGCTCTGGCAACTGAACTAAAAGGGAAGGCATCTAATAAAATGGACATTAAAAAGGCTTTCCAGAAACTGTGGGTAGAATGGAGTGATGAAATTTCTGCTTTGCATGTGCCAAAGAATGAGGAAGATATAGAAGCTGTAGTGGACACCATCCTCCTTGATTGTTTCAAAAAGCACGTGGATCTAATCGCTAAAGTGATGAAAAAAAGCGAAAGATTCTTGTTTaatgaaaagacacacatttcgaaacaatcaaaaattgttttattaacgCAAAGATTCACTTACAAAGATCGAGTGTCTGTAGATGAGCTAACAGAGGACATCACACAAACCGTGAACACTTATATCGAGcgaaagaaagaggaaaagctTGACTTCAGTCAGAGTTACATCTACGGAATGTTGGATGAGATCAAGGAGCACATTGATGAGTTTGGACAATCTGTGAAGCACTTCAGGATCACAGATGACTACAGAGTGGAACTTTCCATCTACCTCTGTAGATCATCTATGGAGAAGTTCAAGGACATGCGTAAGGCATTCAGGAAAGCGAATGATCCCCTGGCCTACCTATTTAGCAAAAGATCTGAGTATGTCAAGATGTTTGAAAGTTTCTGTCAAGGAATTACATCCACCACATTCTTTGCAGACTTTCTGTGCACTAAGCTGAAACCAGCCATCCAGCAGGCAGTGTATGATAAGGCCAGCATCAGGATCACAGAGGAGATGAGGTCAAACTACCCAGCTTTCAGTGGCAACAGATCCAACCTGGAGAATCACATCCTGAGACACCTTGCTGAGGTGGGCAACTTTAACTCCTACATGGAATACATTAACCATCCAAAGCGTTATTTTGTAAGATTTATTAGGCAGCACGTGGCAAAGTACTGCAAACGTGGAGATAGTCTTGTGAGGTTACTGAAGGAAAGCCTTGAGTCTTTAATTAAGACCGTCTGCTCCACCAGCAATGAAGTAACTGCCGTGGTACAAGTGAATCAAGGCAATGCCTCGATGTGGCTGAATAAATTTTGTGCAGACATCGGGGGACACATAGTTCTGTCAAGAGACGACCTAAGAAGCATTGAGGCCGAAGACATCAGCGACCTGCATTTcttcaaaaacacaatgcagGAGAACCTGGCAGTTATGGCACATGAACTGAAAGAAGgtttcaaagacaaaacaacagATCGGTCACAATTCCGCAAGAAACCGGATGACATCCTGACTCAGCAGCTCAGTGGGTGCTGGGAGCAATGCCCCTTCTGCAAAGCCATCTGCACCAACACCATCCCCGGCCATGACACTGATCACAGCATCCAGTTCCATCGGCCCATGGCTCTTGCTAGATGGTATTATCACAATACTGAGCATATTTGTATCGAGTTCTGCACCACATCAGTCAGTAGTGACCGGTCATTCTATCCTCACCATGGTGATGTTAGAACTGTTCCTTGGAAAAAGTACAAAGAAGCCGGTCCACCCTACAGCACATGGAGCATCACTCCAGACCACTCTGAGAAGCTGTACTGGAAATGGATCATCTGCACATGgcaggaggagatggagaagaaAACTGGAAAGAAGTTTACAGGCCCGGGGGAAATCCCAGAGAGCTGGAAAACCATCACAAAGCAAGCCGTGCTGCAGGAGCTGCAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137245 lncRNA downstream 23427 3976709 ~ 4035331 (-) True G109609
TU137158 lncRNA downstream 82141 3976203 ~ 3976617 (-) True G109540
TU137130 lncRNA downstream 191717 3866720 ~ 3867041 (-) True G109514
TU137095 lncRNA downstream 224335 3826510 ~ 3834423 (-) True G109483
TU137079 lncRNA downstream 250971 3805656 ~ 3807787 (-) True G109472
TU137260 lncRNA upstream 15664 4081807 ~ 4083452 (-) True G109619
TU137272 lncRNA upstream 72891 4139034 ~ 4139269 (-) True G109628
TU137273 lncRNA upstream 86768 4152911 ~ 4153581 (-) False AMCG00006414
TU137276 lncRNA upstream 97839 4163982 ~ 4164557 (-) True G109632
TU137278 lncRNA upstream 100185 4166328 ~ 4166589 (-) True G109634
AMCG00006406 mRNA downstream 2513 4050226 ~ 4056245 (-) True AMCG00006406
AMCG00006407 mRNA downstream 15531 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006402 mRNA downstream 180716 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006400 mRNA downstream 199841 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006397 mRNA downstream 211035 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006419 mRNA upstream 23157 4089300 ~ 4090132 (-) True AMCG00006419
AMCG00006416 mRNA upstream 33304 4099447 ~ 4108705 (-) True AMCG00006416
AMCG00006417 mRNA upstream 43832 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006418 mRNA upstream 59669 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006422 mRNA upstream 65825 4131968 ~ 4132747 (-) True AMCG00006422
TU136502 other downstream 1728767 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1928503 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2034615 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2176921 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2333910 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 98791 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 1947961 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2719170 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3012246 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4656245 8722388 ~ 8724352 (-) True G110507

Expression Profile