RNA id: AMCG00006408


Basic Information

Item Value
RNA id AMCG00006408
length 1614
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00006408
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3922421 ~ 3924520 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaatttCAGTGAAAACTTCATCCATGAAGTAACTGAAATTGTAAAAAGAAGCATTAACGAATCTGAAATGAGCACAGATTTGACAGAAGACTACAGAATTGACTTATCTATTAGTCTCTGTAAAGTAGATGCAGAAAGGTTCAAGAAAATGCATGATGAATTCAAGAAAGCAAATGATCCCTTAACAAACCTTCAAGGTAAGGGACAGGAGTACTTCCAGATGTTTCAGAAATATTGTGAAGGAGCAACATCCATCACCTTTTTTGTTGACTTCTTATGTAAGAAACTCAAACCAGCAGTCCAGGAAGCCATGTATGAGGGAGCCAGTGTCCAGATCACAGATGAGCTGAAGTGCAACCATCCTGCTTTGAATGGCAATAGATCAaatttggaaaaatacatactgagacacattgCCAAGGAGgagaactttaaaaaatatgaacagtATTTAGACAATACTAGGGCTTACTTTGAGGGGTACATTCAACAAACTGTTGAGGACTATTTTAAATCCAGTGATAATGCACTGAAAATTATTCATGCCAATCTACAAAGCCTGAAAAgGTTCTGTGAACAGGTTACAACTCATACAGAGCTCTCAAGAGATAACCTGAGAAATATTGACAATGATGATATCAGAGATATTGAGTTTTTCAAAGAAACATTAACAAAGTCACTTGAAGACATGTGGAGAGCCTTAGAGAAAAAGTCCAACAAATCAGCATCTGTTGACTTGGcaacatttcaaaacagaccAGATGACATCTTGATTCAGCAGCTCAGTGGGTGCTGGGAGCAGTGTCCCTTCTGCAGAGCCATGTGCACCAACACCATCCCTGGTCACAACACTGATCACAACGTCCAGCTCCATCAACCTCAAGCTTTGGGCAGTTGGGAATACCATAAAGACAGTGTCATACAGCAGTTTAGAAATGTGAAGACTGCTGTCATGCAATACATTGACAAGATAGAGGAGAATCAATGGGACTTCAATGATGAGATCatcattgacattttaaagataatgaaaacaatgacaAGTAAACCTGAAAAACATGCAACAGAATTgaaaacagaattattttgGGGTTTTGAGAAGTTTTGTGAGGGAGGGGCACCTGTCACATTCTttactgtgtttctgtgttacAAACTAACAGTGATCCAGCAGGAAATGTATGACAAAGCCAACATCAGCATCGCAGAGGAGATTAGGTCACAATACCGAGCTTTCTGTAGCAACAGATCCACATTGAAAAAACTAATACTTACACATCTGGAAAGAGAGGACAACATTACGAACTGTGAGAAATATATTGGCAGAATAGAGGAATACCTTCCAATTTACAGTAAAGAAAGGCTTGAGGAATACTGCAGAGCCAGTGGAAAATTAGAGAACACCCTTTATGAAAAACTTGATGGTTTAATAAAGGACTATTTTCAAATCACCAACACAGTTAATACAGCTGTGAAAAAGATGAATAGCAATGCCTCCATGTGGCTGGATGAATTCTGTAAATGCCTGGGAGAAGTAATGGAAATCCCAAGAAGAAGCCTGggaataattgaaaatgaagaTTTAGGAGATCTGGAGTTTCTCAAAAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137140 lncRNA upstream 11373 3909961 ~ 3911048 (+) True G109523
TU137110 lncRNA upstream 57689 3864485 ~ 3864732 (+) False AMCG00006393
TU136961 lncRNA upstream 147877 3772549 ~ 3774544 (+) True G109396
TU136954 lncRNA upstream 167380 3722519 ~ 3755041 (+) True G109392
TU137147 lncRNA downstream 11460 3935980 ~ 3936902 (+) True G109530
TU137149 lncRNA downstream 19249 3943769 ~ 3943994 (+) True G109532
TU137159 lncRNA downstream 52208 3976728 ~ 4035308 (+) True G109541
TU137200 lncRNA downstream 231444 4155964 ~ 4156206 (+) True G109571
TU137201 lncRNA downstream 231922 4156442 ~ 4156969 (+) True G109572
AMCG00006409 mRNA upstream 493 3921234 ~ 3921928 (+) True AMCG00006409
AMCG00006410 mRNA upstream 1639 3919904 ~ 3920782 (+) True AMCG00006410
AMCG00006404 mRNA upstream 25963 3893263 ~ 3896458 (+) True AMCG00006404
AMCG00006393 mRNA upstream 57877 3858934 ~ 3864544 (+) False AMCG00006393
AMCG00006395 mRNA upstream 82423 3832261 ~ 3839998 (+) True AMCG00006395
AMCG00006403 mRNA downstream 155106 4079626 ~ 4082166 (+) True AMCG00006403
AMCG00006411 mRNA downstream 167168 4091688 ~ 4099718 (+) True AMCG00006411
AMCG00006420 mRNA downstream 209348 4133868 ~ 4134566 (+) True AMCG00006420
AMCG00006412 mRNA downstream 223184 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006413 mRNA downstream 235682 4160202 ~ 4167952 (+) True AMCG00006413
TU137096 other upstream 59151 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 281760 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 322724 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 348712 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 415742 3503181 ~ 3506679 (+) True G109362
TU137156 other downstream 39077 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 228296 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 235003 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 552414 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 600286 4524806 ~ 4527738 (+) True AMCG00006445

Expression Profile