RNA id: AMCG00006414


Basic Information

Item Value
RNA id AMCG00006414
length 4037
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00006414
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4152816 ~ 4158123 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGAAGTTATGTTTTAAAGTGTAGCATCCCCACTTCCATTCTTGAAACCAATTCGCCCGGTCATCCCCACCGCCTGATCCTCCCCTCGGCGTGTCGGGGGTCCCCGCCCGGCATGTTATCGGAAGTACAGCCTTGCTTCCAGTTGCTGCGTATCGGACCGTCCTCGGGCTCCAGCTCGGACGCCGCCCGGGACCTGTACACCTTCAGGCCGGCCCTGCCCCGCTGCGTGTTCCGCCTGGGCCGGCGCGCCGAGCTGTGCGACGTGACGCTGCAGTCGGAGAGTCGGCCGGAGCTCATTTCGCGAATCCACGCCGAGCTGCAGGCGcagaaggaagaggaagagcaggATGAAGGATGGAGGGTGTATATGGTGGACCACAGCAGCCATGGCACCTGGGTGAACGATTCCCGTCTGAAGCGTGGCGAGCGCACGGAGCTCAGCGACGGCGACACCCTGACGTTTGGCGAGGGAGACCAGGCCGCCCCGGGCTCGGACGCCAGCCCCGAGTTCTACTTCCTCTTCCAGAAGGTGCTCGTACGGCCTCAGGAGTTCGACGCCATCACGGTGCCCAAGGCCTCGTCCTTCACCACCCTGAGCGGGCAGCCCTCCATGTTGCCCAGCGCCGGGCGGGTCAAGACGCTGTGCCGCACCCCCGAGCTCTCTGCGCCGCTCCCCTCGAACAAGGCCACTGTCATTCTCAACTCCATCGGGAGTATCAGTAAGCTGCAGGCTCGCCCGCTGACTTTCCACCCGGAGAAACCACCGCTGACCCGGCCGCGCGCCCTCTCGGCCACCTTCACCCCGCctcccgcctcctcctcctcctcttcctcctcctgctaCGCCGCGGGCCGCTCATCCAAGAGCAGACGCAAGTCAGCACACACTGTTCTGGCTGAGCTAGAGGATGAGGTCTCCGAGGAGGTCCGGCAGGCCAAGAGACGCCACTGCAAGTCAGAGTCGGACGCCCAGCCACCCCAGGCCGCCCCCTGTCACTCCCTGGTGTCCAGCTTTGTGCAACGCACCCCGAAAGGCCAGCGCAGGAGGCTGCCCAGCAGCGGGAACCTCTACAGCCCCCTGTTGATGTCCAGAGAGCACTGCGGTCGGCTGGGGCAGGACCAGAGCGACGGCAGCACCGCCCTGCTGCACAAACTGCACATGAGCTCTGTGGGGAAGCGCCGGGGGCGGCCCAGGAAGCACCCGCTGGTGTCGGGGCACCTGTACGTTGAGACCGAGGTGCGCCCGGCGGCCCTGGGGACCCCCCTTCGAGAGCTGGCCGAGCCCTGCGCCTCCCCGCGCTGCCGGCTGCCCCAGCAGGACACAGTGAAGTGGGTACAGTGTGACGACTGTGATGCCTGGTACCACGTGGACTGCGCCGGCTGGAGCGACGGCAGCGTGCAGGACGCGGCCGCCGAGTTCCACTGCGGCTGTCGCTGACGGGACCCCAATATCCCCCCTGAACTGGACTCGGGGTGAAGAGAGGGGCACCTTGGCCAGCGTGGTGTCTTTATTTCGAAGGGATTTTGTTTGAGCTTTGGGAGTCTTTGTTGCAGTGTGTCCAATAGAGTCTGGACTCTGTTACCTTtctgatacatttatatatctgtatttttaattttttaagatTTCGGAAACTTATTGGTCTCAGAGGCAGGATTTTCCCAGTTTAAGCACTACTGCCTGCACCTATTTCGGGAAACCTGCTGGAGAATGTGCTCTGTCTCAGCGTGCTTTTTAAATAACGCTTTCTCAGGTCTCGGAGGCCATGTGTCTTGTCCCTGAAGGAAGGGTGGGCTGGTgcaacacaatgtttttttttaatctgtgtggattgtttttagtttttataccTTACCAATCAGTCGGTCTCACCCCTATAATCCCAGTTCTTAATGTGGGACGGATGCAGGCAGTCAACACAAACTCttactatctctctctcacacacacacacacaccttcccaTTGTTTACCAATCAGTAATTATAAGTCCATTTGGGTTTGTTCTTTTACTATCGGCTCACAGGCCCACAGCGCTACGATGGAGCTCTCGCTGTGAAGGCTGCAGCACTCCCAGGTGTCCCAGTCAGACACAGGGGGGTGCTGTTCCCTTGAGTTACGTGCAAAGGAAAACCCTTGTTGACTGCAGCCCACGCAACCCCCAGCGGCCCTCAGACAGCTCCACTCTTGTGGGGAATCCCAGCCACAGGTGGCTATGACACAGTCCAGAATGGAGCCAATATGTCTGGACTATAGGGTTCAGATTGAAGCCAGCTTTGTCTGGACTATTTGGCTTGACCCATCTCCTATACCAATAACATTTGACCGACTCTCTGCCTTAATTTATGatgttactttttatatatatgaaaatgtgtttttttcaatcCTTCTGAGTTTTTTGTGGCTATTTTTTTCAAGGGTGGATggtgctttaaaatgaatgcgATTTAATCCTTCATTATGCCATAGACATTTCACCTCTCTCCCCCTGTTACTGAGGATCTCGCATCTACACAATGCACAGCAGAGTTACCCTCACCTGAGCACAGTGGCATCAGGGAGAAAGCCCATCGACTCCAAACCAGTGCTTTGCGATTATCTGTCTATAGATGGAGATCAGCAACACACACTTTTGTGAAAGGCTGCTTTGTGATTGATTTCAGAGGCTGGATAAATGGCTTCCAAGATAGTAAGTTGCGAAAGACAGGGAAAATAAGACCCTTCTGACTCATAGCAAGTGCGCTGAAAATCCCTGGGTCTCTCAAAAATATCTCATGGCATGAGGTCTGGCAACACTCTTGTGATCATTTAAATTCACTTGGTTAGTGGTTGTGTTTCCAGGGGCAGGAGGAAAGCAAAGAGGTTGCGTACCAGTTTTACTTCCCAGTTTTTGTTCCAGTAAGCTTGTTTTGTCAATCCTGCCCTCGGCACAGTACAGGTCTGCTCTTTCCTAGTAATGTACAATGTGTATTAATTGTCTTTATTGAAAATggagtaaaaaaatacatatgctaGAAGGActgggaaataaaacaacagaatgGTTGTCGGTGACATATTTTAAGGTTGTTGAAGATTTCTGATCCCAAGCTAATTCTGCTGAAGGGTTTTTGAAAGTTGCAGCAGCTTTTTGAAGGAAGGAGTCTGCCAATAGCTGTATAGTAACCTGAAAATgcaacatgtatgtatgtatgtatgtatgtatgtatatagatatatgtgtgtgtgtgtatgtgtatatatatatatatatatatatatatacacatatacacactggCTATGAATGCAGTCAGTTGACCTAAGCGTATGAGACCAGCAAGTACAATGAGAAGACTTTGACCCACTAAATATGGGCCCAACACAAATGTCTAACATCCCTCATGAGATAAACAGAGACTTGTAACAGCAGgatctccagccctggtccttcTACAGTACTGTTAGAAGGACCTGGAGATTATCCGAAATGGACCCAAGCATCTAAAAGGCTCTTCAGTGGGGGCGCTGAGTGGAATATGTAAATGAAGTACCTTTACAAAGTCTGGGTGTCATCTGCCTGTCTCTGCCGAGTAAAAGCTATACCACAAAGGACTGGAGCAACAGTAgtaaatactatataataaCGTATCGGCTTGCCTGCTTGTATGTGTAGTGCAGGTGATTCagaatatatctatatctgtccTGGGGATATTGATCACTGAGTCAAATATACGcgtcacatttatttatacggGTTAATCTCTTACCGATTCCATCATTTCCTCTCCCTGTCACTGGGGAGATTTTAAGCTAAGagacatgtatatttttaaatattttttgtcaatgaaccatgcatgtatgtgtcatgtttgtatgtatgtatatatttaataatactcTGGTTTTGTCCATCTGTCGCTTATCATTGCCGAACAATAAACGATGCAGGAAAAGTGGAAATCAAGGTGAATAGTATGTTGTTTTGTCAGGAAAGTATAATTAAGGATGGTTTTATGACCAACGATAAAATGTGGAAGGAGTGGG

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137272 lncRNA downstream 13547 4139034 ~ 4139269 (-) True G109628
TU137260 lncRNA downstream 69364 4081807 ~ 4083452 (-) True G109619
TU137245 lncRNA downstream 117485 3976709 ~ 4035331 (-) True G109609
TU137158 lncRNA downstream 176199 3976203 ~ 3976617 (-) True G109540
TU137130 lncRNA downstream 285775 3866720 ~ 3867041 (-) True G109514
TU137276 lncRNA upstream 5859 4163982 ~ 4164557 (-) True G109632
TU137278 lncRNA upstream 8205 4166328 ~ 4166589 (-) True G109634
TU137279 lncRNA upstream 8828 4166951 ~ 4167239 (-) True G109635
TU137280 lncRNA upstream 9927 4168050 ~ 4169112 (-) False AMCG00006415
TU137257 lncRNA upstream 108704 4266827 ~ 4268470 (-) True G109616
AMCG00006421 mRNA downstream 11182 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006422 mRNA downstream 20069 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006418 mRNA downstream 21959 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006417 mRNA downstream 29179 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006416 mRNA downstream 44111 4099447 ~ 4108705 (-) True AMCG00006416
AMCG00006415 mRNA upstream 10914 4169037 ~ 4177052 (-) True AMCG00006415
AMCG00006431 mRNA upstream 31726 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006425 mRNA upstream 37197 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006426 mRNA upstream 42638 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006430 mRNA upstream 63955 4222078 ~ 4230525 (-) True AMCG00006430
TU136502 other downstream 1822825 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2022561 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2128673 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2270979 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2427968 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 6811 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 1855981 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2627190 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2920266 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4564265 8722388 ~ 8724352 (-) True G110507

Expression Profile