RNA id: TU137280


Basic Information

Item Value
RNA id TU137280
length 1063
lncRNA type sense_over
GC content 0.43
exon number 1
gene id AMCG00006415
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4168050 ~ 4177052 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gGTGGCCACGGCAGTGGCTACTGCCATGTATAAGAGAATCAAGAGTTTCAAGGAGAGAGACCACAGTGGGGAATAGGCGTGGGGGCGACCTCTCGCACACCCCTCCCAGAGCAAATACATCTATCTGGGACATCTGAGCCCCGACCGTGTTTAGAGAGGGAAAAAGACATGACATTGGAATAGATGAACAAGAAGAGATTGGTGGTGCGTTTTGTTACCACCACTAATCAGTCGCTCAGTCTTCATTTGATATAGCGCCCTGCGTGTGACAGTTGTCTAAGAGTACCCTGCAGGACTCGCGTATACATGAAGTGCAAGCCAATGTATACGAGACGCACAGCAGGCAAACCattagagaggagagagagatgcaggggAATCGGGGTGCCACTGTGTCCGACCCTGTAAATTAATTTGACTTGCAAAACCCGGTCAGGAGTGATTCCTATGATGACCATGTCCAAGTGCGGCAGCGATGTAGGAGATTGCCAttgttttcttgaaatgtgATGCATAGCCAACAagcaaattgtgttttgtgtgtgtgtgtgcaatggGCAGGGGCGAAGCGATGAGGTTTTCCACATACCAGCATCCCCAGAATGACCTGTGAATCTGCAGAGCCACAGTCGCGTGAAGAGAATGCAGGTGTGTTAAACTCCTGCTGCCGTCAATCCACTGCCACTCGACCGCACACGTTCTGGACTGCTGTGCTGCCCAGAGGTGTACTGCACACATTGTACTGTATATTCTGtagtttctttacattttttaaatttgcaaaGTACAGCATTTTATTACACAGTGAATTCAAATTTCTATGAAtggaaaaaatgttatattttgttaaatgtatctCTTGGATGAAGatgtcatttaataattgtttacaGTTGcaactttgttttgtattactgGATATGCCTTAATAGCCCAACCTAAgcaaaagcacaataaaaactgcaaaactgttTCTAATGACTGCAAATAACGCTTTGGTAATTagtttacaaaacacatttacagaaaacatttaataaacaatgtaatttgcaaaatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137279 lncRNA downstream 811 4166951 ~ 4167239 (-) True G109635
TU137278 lncRNA downstream 1461 4166328 ~ 4166589 (-) True G109634
TU137276 lncRNA downstream 3493 4163982 ~ 4164557 (-) True G109632
TU137273 lncRNA downstream 14469 4152911 ~ 4153581 (-) False AMCG00006414
TU137272 lncRNA downstream 28781 4139034 ~ 4139269 (-) True G109628
TU137257 lncRNA upstream 97715 4266827 ~ 4268470 (-) True G109616
TU137298 lncRNA upstream 106217 4275329 ~ 4276386 (-) False AMCG00006429
TU137341 lncRNA upstream 139061 4308173 ~ 4311951 (-) True G109689
TU137350 lncRNA upstream 175275 4344387 ~ 4349812 (-) True G109692
TU137406 lncRNA upstream 345198 4514310 ~ 4515575 (-) True G109735
AMCG00006414 mRNA downstream 9927 4152816 ~ 4158123 (-) True AMCG00006414
AMCG00006421 mRNA downstream 26416 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006422 mRNA downstream 35303 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006418 mRNA downstream 37193 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006417 mRNA downstream 44413 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006431 mRNA upstream 20737 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006425 mRNA upstream 26208 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006426 mRNA upstream 31649 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006430 mRNA upstream 52966 4222078 ~ 4230525 (-) True AMCG00006430
AMCG00006427 mRNA upstream 64552 4233664 ~ 4242559 (-) True AMCG00006427
TU137277 other downstream 2450 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 1838059 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2037795 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2143907 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2286213 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1844992 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2616201 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2909277 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4553276 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4618706 8787818 ~ 8794062 (-) True G110520

Expression Profile