RNA id: AMCG00006417


Basic Information

Item Value
RNA id AMCG00006417
length 3995
RNA type mRNA
GC content 0.59
exon number 31
gene id AMCG00006417
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4109975 ~ 4123637 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGTGGTGTGCCCAGTGAAGTCAGCCCCCCTGTCTCAGACGACAAGCATGGCGACCCTGTACGTCTCCCCGCACTCGGACGATTTCCGCAGTCAGCTGGTTCTGATTGCTGCCCAGTTCTCTGCCCCCAAGCCGGCGCTGGGGAAGGGGGTTCCGTCGGGCCAGGGGCTACCCTGCCTGGTGCTGAGCGATGGTCTGGTGCTGTCGGGGGCGTTGGCGGTGGCGTGGTACCTGTGTCCCGAGAGACTGACTGGGATGGAGCTGAAGGAGGCTTCCCTGATCCGCCAGTGGCTGAGCTTCGCGGAGAACGAAGTGACGCCTGTGGCCTGCGGTGCTGCCTTCCCCCTGCTGGGGGTGCTGAACACTAACAATCAGACTGCCGACCGGGCCCGCTCCGAGCTGCGCAAGGTCCTGGGCTTTCTGGACGCCCATCTGAAGCTGCGCACCTTCCTGGTTGGGGAGAGGGTGACCCTGGCGGACGTCGCGGTGGCCAGCACTCTTCTGCTGCCCTTCAAATACGTGCTGGAGCCGGGGCTGCGGAAGTCCCTGATGAACGTGACGCGCTGGTTTGAGACCTGTGTCAACCAGCCACAGTTCAGACAAGTCCTGGGCAAGGTGGCGCTATGCGAGAAAGCGGTGCCGGTCCAGCCCAAACCCAGCTCTGCTCCGGCGGCACCCACTTCCAGCGGTCACGTGCAGCCGAGTGCCGCCGCCCCCCCCAAGACCGAGGCCCAGCTGAAGAAAGAAGCCAAGAAGAAAGAGAAGCTGGAGAAGTTCCAGCAGAAGAAGGATATGGAGcagaagaagcagcagcagcaggctcAGACAGAGAAAAAGAACAAGccagagaagaaggagaagaaggaccTGGGTGTCATAACCTATGACATCCCCACCCCGCCGGGGGAAAAGAAAGATGTGAAGTGCCCCATGCCCGACTCCTATAGCCCCCAGTACGTGGAAGCGGCCTGGTACCCCTGGTGGGAGAAGCAGTCCTTCTTCAAGCCGGAGTATGGGCGCAAGGATCTGTCCCAGCCTAACCCGAAAGGCGTGTTCATGATGTGTATCCCTCCGCCCAATGTGACCGGATCCCTGCACCTCGGCCACGCCCTCACCAACTCCATTCAGGACTCACTGACGCGCTGGCACAGGATGCGTGGAGAGACGACGTTGTGGAACCCTGGCTGTGACCACGCGGGCATCGCCACCCAGGTGGTGGTGGAGAAGAAGCTGTGGAAGGAGCAGGGCAAGAACCGACACGACCTGGGAAGAGACGCCTTCATCGCCGAGGTCTGGAAGTGGAAGAACGAGAAGGGAGACCGCATCTACCACCAGCTGAGGAAACTGGGCTCGTCTCTGGACTGGGAGAGGGCCTGCTTCACCATGGACCCAAAACTGTCCTACGCAGTGCAGGAAGCCTTTGTACGGATGCATGAGGAGGGGGTGATCTACAGGAGCAAGCGCCTGGTCAACTGGTCCTGTACGCTGAACTCCGCCATCTCGGACATCGAGGTGGATAAGAAGGAGCTGACGGGCCGGACACTGCTGCCTGTCCCGGGATACAAAGAGAAGGTGGAGTTCGGAGTCCTGGTGTCCTTCGCCTACAAGATTGAAGGATCTGaCGAGGAGGTGGTTGTGGCCACCACTCGTATAGAGACCATGCTGGGAGACACTGCGGTGGCCGTTCACCCTGAGGACCCCCGATACCAGCATCTGAAAGGCAAAACTGTGCATCACCCATTCTGCGACCGCAAGATGCCCATTGTGTTTGATGACTTTGTGGACATGAGCTTTGGAACAGGTGCTGTGAAGATCACCCCAGCCCACGACCACAACGACTACGAGGTGGGACTGCGGCACGACCTGGGCTTCATCAACATCCTGGACGACAACGGCTTACTCATCAATGTCCCGCCTCCCTTCCTGggcatGAAGCGCTTTGACGCCAGGAAGTCGGTCCTGCAGGCTCTGAAAGACCGAGGCCTGTTTAAGGAGACCAAGGACAACCCCATGGTGGTTCCTGTGTGCAGCCGCTCCAAGGACGTGGTGGAGCCGCTGATGAAGCCGCAGTGGTACGTGGACTGCTCCGAGATGGGCCGGCAGGCTGCGCAGGCCGTGAGGTCCGGGGAGCTGAAGATCATCCCGGAGACCCACCTGAAGACCTGGTTCAACTGGATGGACAACATCAGGGACTGGTGTATTTCTCGACAGCTGTGGTGGGGTCACCGTATCCCAGCATACTTTGTGACTGTGAATGACCCCTCTGTTCCTGCTGGGgagGACACTGATGGGAAGTACTGGGTGAGTGGGCGCACAGAAGAGGAGGCCAGAGAGAAGGCAGCCAGCCTGTTTGGAATGAGGACGTGCTGgacacctggttctcctccggAATCTTTCCCTTCTCGATTTTCGACTCAGGACCTGCAGGTTTTCTACCCTGGCACCCTGCTGGAGACGGGCCATGACATCCTGTTCTTCTGGGTGGCCCGGATGGTGATGATGGGGCTCAAACTGACTGGGAAGCTGCCCTTTAAAGAGgtcTACCTCCACGCTGTTGTGAGAGACGCCCACGGGCGCAAGATGAGCAAATCTCTGGGCAACGTCATCGACCCCCTGGACGTTGTGACCGGCATCACCTTGGAGggtCTACACGCCCAGCTGGTGGAGAGCAACTTGGATCCTCTTGAGGTTGAACGAGCGAAGCAGGGCCAGAAATCCGACTACCCCAGCGGGATCCCGGAGTGCGGGACGGACGCTCTGCGCTTTGCCCTCTGCGCCTACACCAGCCAGGGCAGGGACATTAACCTGGATGTCAACCGCATCCTGGGCTACAGGTACTTCTGTAACAAGCTGTGGAACGCCACTAAGTTCGCCATTCGGGGCCTGGGAGACGACTTCAAACCCAAAGAGCGAGCGCAGCTGAGTGGTCAGGAGAGCCTGGTCGATCGCTGGATCCTGTCTCGGCTGTGTCACGCCGTGGAGCTCTGTGACTCCGGGTTCAAGAGCTATGACTTCCCTGCCGTCACCACCGCCATCTACAACTTCTGGCTGTACGAGCTCTGTGACGTCTACCtggagTGTCTGAAGCCGGTGTTCGCGGGTAGCGACACAGTGGCGATGGCCGTTTCCAGAGAGACGCTCTACACCTGTCTGGACGTGGGGCTTCGGCTCCTCAGCCCCATCATGCCATTCGTCAGCGAGGAGCTCTTCCAGCGGCTGCCACGCCGATCGGCCCAGGCCCCGCTGAGCATCTGCGTCACGCCATACCCAGAGGCCACCGAGTTCTGCTGGAGAAGTGAGGAAGCGGACGGACAGATGGAGTTTGTGATGACCATCGTGAGGACGATCCGATCCTTGAGGGCCGACTACAACCTCACCAAGACCAAGGCAGACTGCTACCTACAGTGTTTGGACCAGAACACAGCCACCATGGTGCAGCTCTACTGCCCCCAAATCCAGACCCTGTCCTCCTCCGGGGCCGTGGTGGCCCTGACGACGCAGCCGGTGCCCGAGGGCTGCGCGGTGGCCATCGCCTCCGACAAGTGTACCGTCAACCTGGTGCTCAAGGGCCTGATCGACGCAGAGAAGGAGATTGCCAAGCTCAGCACCAAACGTGGGGAGCTGCAGAAACAGATTGAGAAGCTGCAGGAGAGGATGGGCAAGTCGGACTACAGGGAGAAGGTGCCGCAGAAAGTGCAGGAGGGAGACGCAGAGAAGCTGAAGCAGAGCcagacagagctgcagaaagTCCACGAAGCCATAGAGAACTTTAAGAAAATGCTGTAACCAATCAGCATCGAGGCCTCGTCCGTCTGTCCAATGGGCTGATGAGGAAGAACATTCTTTGGGACAGACCCCTCCGAGTTCGACTTGAACACTTCCTGTTTGCGGAAAGTCACAGCTGGGGAACCGAGTGTTGCATGGGTCTGATGATGTCTGTTTAGTCACTGTCCTTAACACTGGGAAACccaaataaatagtattttatgcAA

Function

GO: NA

KEGG:

id description
K01873 VARS, valS; valyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137260 lncRNA downstream 26523 4081807 ~ 4083452 (-) True G109619
TU137245 lncRNA downstream 74644 3976709 ~ 4035331 (-) True G109609
TU137158 lncRNA downstream 133358 3976203 ~ 3976617 (-) True G109540
TU137130 lncRNA downstream 242934 3866720 ~ 3867041 (-) True G109514
TU137095 lncRNA downstream 275552 3826510 ~ 3834423 (-) True G109483
TU137272 lncRNA upstream 15397 4139034 ~ 4139269 (-) True G109628
TU137273 lncRNA upstream 29274 4152911 ~ 4153581 (-) False AMCG00006414
TU137276 lncRNA upstream 40345 4163982 ~ 4164557 (-) True G109632
TU137278 lncRNA upstream 42691 4166328 ~ 4166589 (-) True G109634
TU137279 lncRNA upstream 43314 4166951 ~ 4167239 (-) True G109635
AMCG00006416 mRNA downstream 1270 4099447 ~ 4108705 (-) True AMCG00006416
AMCG00006419 mRNA downstream 19843 4089300 ~ 4090132 (-) True AMCG00006419
AMCG00006405 mRNA downstream 43832 4058758 ~ 4066143 (-) True AMCG00006405
AMCG00006406 mRNA downstream 53730 4050226 ~ 4056245 (-) True AMCG00006406
AMCG00006407 mRNA downstream 66748 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006418 mRNA upstream 2175 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006422 mRNA upstream 8331 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006421 mRNA upstream 10973 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006414 mRNA upstream 29179 4152816 ~ 4158123 (-) True AMCG00006414
AMCG00006415 mRNA upstream 45400 4169037 ~ 4177052 (-) True AMCG00006415
TU136502 other downstream 1779984 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1979720 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2085832 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2228138 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2385127 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 41297 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 1890467 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2661676 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2954752 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4598751 8722388 ~ 8724352 (-) True G110507

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019465 True 4150 mRNA 0.50 31 NC_007127.7 10429770 ~ 10475814 (+)
grasscarp (Ctenopharyngodon idella) CI01000016_04246693_04261518.mRNA True 3804 mRNA 0.50 29 CI01000016 4246693 ~ 4261629 (+)