RNA id: AMCG00006419


Basic Information

Item Value
RNA id AMCG00006419
length 300
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00006419
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4089300 ~ 4090132 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGGCAGAGGAAAGACCAGCGGCAAAGCCAGAGCGAAGGCCAAGACCCGCTCCTCCAGGGCCGGGCTGCAGTTCCCAGTCGGCCGTGTGCACAGGCTGCTGCGGAAGGGAAACTATGCCCAGCGGGTCGGTGCCGGAGCCCCGGTCTACCTGGCCGCTGATTATGTTACACAGGAACTGCGTGCTAATGTGAGGATGGAGCGCAGGACAGCAGCTCAAGTCATTGTTGTCGCGGCTCGACAGCCGTCCAATGAGCGCCCGGGACGCTGCCACCCAATAGGAACGGGCGTCTCTTAA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137260 lncRNA downstream 5848 4081807 ~ 4083452 (-) True G109619
TU137245 lncRNA downstream 53969 3976709 ~ 4035331 (-) True G109609
TU137158 lncRNA downstream 112683 3976203 ~ 3976617 (-) True G109540
TU137130 lncRNA downstream 222259 3866720 ~ 3867041 (-) True G109514
TU137095 lncRNA downstream 254877 3826510 ~ 3834423 (-) True G109483
TU137272 lncRNA upstream 48902 4139034 ~ 4139269 (-) True G109628
TU137273 lncRNA upstream 62779 4152911 ~ 4153581 (-) False AMCG00006414
TU137276 lncRNA upstream 73850 4163982 ~ 4164557 (-) True G109632
TU137278 lncRNA upstream 76196 4166328 ~ 4166589 (-) True G109634
TU137279 lncRNA upstream 76819 4166951 ~ 4167239 (-) True G109635
AMCG00006405 mRNA downstream 23157 4058758 ~ 4066143 (-) True AMCG00006405
AMCG00006406 mRNA downstream 33055 4050226 ~ 4056245 (-) True AMCG00006406
AMCG00006407 mRNA downstream 46073 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006402 mRNA downstream 211258 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006400 mRNA downstream 230383 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006416 mRNA upstream 9315 4099447 ~ 4108705 (-) True AMCG00006416
AMCG00006417 mRNA upstream 19843 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006418 mRNA upstream 35680 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006422 mRNA upstream 41836 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006421 mRNA upstream 44478 4134610 ~ 4141634 (-) True AMCG00006421
TU136502 other downstream 1759309 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1959045 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2065157 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2207463 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2364452 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 74802 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 1923972 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2695181 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2988257 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4632256 8722388 ~ 8724352 (-) True G110507

Expression Profile