RNA id: AMCG00006423


Basic Information

Item Value
RNA id AMCG00006423
length 4265
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00006423
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4179050 ~ 4185310 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGAGTAGCCCTGAGCAAATCCGCCTGACAGCAGTGCCGGAATGCGGCGCAACTCGCCGAGGCGCTCAGCTATAAGCGGCCGCCGGCTGTGCGGGTGGCGCAGTGCGGGGTGGCGCAGTGCGGGCTGGCAGTACAGATGGCAGCCGTCCTCCTGCTTTGCGTGGCGCCCCTGATCGCGGGGGTCTGGGGCCGGGTGGTGCAGGACGCCGATTTCCTCCCCTGTAACCGTTTCTTTTATATGCAGACCCCTCCCGCAGGATTTGACGGGGGGCAACTGGTGCACATCTGCCAGACATACGAGGGGACGGACTACTTCGCAACCCTGTACAACGCGAGCTGCAGGCTGCCGGTGTATTCCGCCTATGTGGTCACTGTCCGGGGACAGGGAGCGCCGGACTCTGGGGGGCTGGACGATGTATTTATTGAACCCCAGATTGACCTTGGGGAGGCTGGCTCAGACAATATGATGACCGAGGAAGAAGCTAGAAGTGCCATTGCTGAACAGCTGTCTGCAGATACACAGATCAGTGCAGCAGAAGTGGATGCAAATGAACCAGAGGgattagaagaagaagaagtgaTTGCAAACGAAAGAGAAGAAGGAGATCAAGAGGATGGAAATGTATCGCTGGAAGCTGGCGTCAGTGGAATCCTGCAGGGGTTTTTACCCGCAAGCGACGAGGATGAGTCAGAACTGGGAGACCCAGAGAGCCCCCAGCTCCCTGCAGAAACGGACGCAGCCACATACCCCGGGGGTGCCATGCAGCAGGGGCATCTGGGAGGGGGGCAGGCATTGAAACGGGATTTCACTGCCTACAAGACACACTACCTCAGTTCCCCGCGCCTTCAAAACGGAGAGGCCAAACAGGCGACGCGGACCCTGACAAACGCGGTGCCGGTGAGCTTTACGGATGACTGGGATGGGACGGCGTCCAATTTCGTCCTGGACCGCACCTCCCAGGAATGCGCCAGCCAGGGGGGTTCGCTATACGTCATCTCTGGTGCTAGGTCCACCTCGCCCGGGGTCCAGGAAAGGATCTGTCTGGTGGACTTGGTCTGGACTGCTCTGTGCTGCCACATCCCACAGAACGCCTCAGCCTCCTTCGCTCTCGCCCTGGTGAAGGAAGGAGATGGCCAGGCACGGTTCCTCGATCTGCAACAACTCCGGGGTCTGATCGGCGGAGAGGGGGAGCTGTTCAGGGACAACTGTGGAGAAGCGGAGAAGGGGTCCGAGGGAGGGGCAGGGGCTGGGGGAGGCGTGGAGAGGTGGCAGTCTTCTTACAGATCTGCTGTGGAGGAAAGCAGACAGGAAGGGGATGAGGAGGCTGACGAGGATTCTGAGAGCAGGATCGTAGCGGCCCTCTCCTCTGTCCTGTCCACCCTTTATGAGATCCCGAAGCGGGGCACCGGCAGCCTGCTGGAGGTGGCATATGAAGAGCTGGGCATCTTGGCCTCTCTTCCACAGCAGACAGGATCCCTGGTCTCCAGTCTCGGGGGTGATTTGGTCCAAAGTACCAAATCAGTGGCCAGACTGACCCTGAAGGCCGGGGAGGTGTGTGCATCTCAGGCCTACTCCGCCACCTCCCCCTTGCTTGGCAGCCTCTACGCAGCAGTGATGGAGTCCGCCAATGGGCTGGGCACCCTCTCCTCAGAGAGCATCAGCCTGGCCCTGGGCCTAGTGACAGGCACCTCCAGCATTGCAGGAGACTTACTGGGAAGATTCTGGGACTCCTTCAGCTTCTTCTCCACCACGATTGGCGGCGAGCTGGTGAACAACCTGGCAACAGCAGGGTGGGGTACCACGGCAGTGATTGGGGACGTTTCAGAGGCGGTGCTCGATAGGGTGGCAGCGCCGGCTTTGGGAGCAGCGGTGGCATCGGTGCAGGGTACGGTGTCTTCCGGTGGCACCATCCTGTGCGCCTTCTTGGACATCCTGGCATCGGTGCCATTGGACTCCTTCAACGTGGGGGCGGCTATGCTCCAGGGAGTGGTGGACACAGTTTCGGGAACGACTTCTGTTGTGACAGACATGGGCACCCCCGTCTTGACGACCACAGGGAAGGTGTTGGGTAAAATCTGTTGGACAGTGTTTGATGTGTTATTCGATGGTGCGTCCAGTGTGGGTTCAGGGGTCGCCAGTAGAGTTGCGGGTTGCTTTCAGTGGGATGCACAAGAGGGTAGCTCTGTCTTGGAAAGCACGGAGTCCCAAGATTAGGGCTCGAGGTTGGTTGCTCAGCCATGGTCCTGGACAGCCCCCTTCCCAatccagttgtttttttatctcatGATCCCTGACTCAGCCGCTGTCTAAACGAATAGGAAATGCGTGTTACTATGCTGTGATGAATAATGATCAAAAGATGGCTGATTGCTTCCATGATCAGATTGACATGTTTCCAAGTCTTTATTAGCAACCCATTTGGCTTTCCAGCTCACCCCTGAAATAACGCAAATTACTAAACACTGGCAACGCATGTGAGCTACTGAGCAACAGGCAAACCTATTCCTCTCTGCTGCACACAGACATAGTCCAAGTATGAGGGGTAAACCTGGTTTctgcagaaatgcatttatgtGGAAAAGGCCTACAACCCCCTTTCCTAATTCATCACTACCTTAAGATAGCACAGTGCCTTGAGGATTGGGATAAATTGCTAAACAGATCCCCCTGAGCCATTAATGGGCCGAATCAGGTAATTAAGATGTCTGAGTGGACTATAAACCAGAAGAAACTTTACTATCAGCCTCCAGGAACTGAACTGTGCACCCTTGTGTAAAGGCTGCTCGAAGGTTCCCTTAGCAGTCTTTCATAAGATAATTGATAAAAAAAGGAACCACTCTACTTCCTTGCAAGTGTTAAGTTTATTTGTGCTTTGACTGCTATAATCGTACCCCCGGGGCTCAAGGTTTAATTATCAGGAGTGACACAGTGTCGGAGGTCTGTCAGTAGTTGGGGTGTTATTCTCAGCAGGCACTGCCTCCTCATTTTAACCCTGACTGtgtgttcagagagagagagagttgtttCAGAGGGAGGGGGTGTGAGCGGCATCTGGAAAGTGATGCCACATAGTCGACGAGAAGCCACCGAATGGGAGAGAGCTAAAGATGCTTAAAGCTGTTAACCACTGAAAAGTGAGTTCCAGAGGTCGATGTAGCAATTAagcttaaaaacacacaatcttgATACCTACAAGGCTATAGGGTAGTTTGTGTTAATATTGATCTTGCATCGACCTTTGTGGTTTTAATTAtgtgtgatgtatatatgtatattgtgcaACTGgtcatgctttattttatagagGGTGTGGGCTGGCTGCTATGAATTACACTGGGGGACAGCGCTCAACAATGTGAAGTGAAGGGGAGGCATTATGCTGCTGTTGAATTGTGTTTCTTATCTGGGATATGCCCTTTTATAGCACGGGATGATTTGCACCGAAGCTTATGGATCTCTGTTTTACAAAGTATGATTCTAAAGGGGAACTACATTTCTCCTCCTTGTGCTAAAGCCCATGATTTGCAAAGGATACccaaaaaagacaggaaagtTGTCCCGGTTGGAATAACAAGTTGAAAGATAGAAAGAGAAAGGGGGTTAGACTAGAGTAAGAGAAAAAATACTTCAGTGCAAGAGAGAAGGCCTTCAAACAAAGGGCTGGACACAGAGCAAGAAAAGTTCAGCAGTGGACCAAAGCAGACATGGGACTGGGCATGTGTGGAGTCGCAGTCAACAACACTGCAAATGAGGAGAATGAATAGTGTTTTTCATACCTAGCTACACTTATTTTGGTAAAACATTACAacaatgggcaccaattcttaatgaatccCCAAGAAAAAACATAGAACTGCCTGATGCAGTTCCTCTGAGCTCTGCTGTTGCATCACATGTATTAACCCTAACTTGAAACCCTGTCTGTCACCCCATCCCTATCTCTAACCTTGAAacacatgtgattaacagcagaacttaAGAATGCCTATTATTATGATGACATGGGCCTGAGCTCTGGGTTCACAGATAAAGTGCAGACACATCACTAGGTAGCTGGCCAAATGAAACACATGCAGAGTTTTCAGAAGACTTTATTAGGGGATGTTATTATGGGGCTGGTGTGAAGGATGACTAAAACACTTTTTAGTGAGAATGTGTGGGTATATCtcagtttttgtgtgtaaaGCTGTAAagcataaatcatttaaaatgctgaaaattaATGGAATgattgaatatttaataaactttgAAGGTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137205 lncRNA upstream 9944 4168084 ~ 4169106 (+) True G109575
TU137202 lncRNA upstream 19859 4157736 ~ 4159191 (+) True G109573
TU137201 lncRNA upstream 22081 4156442 ~ 4156969 (+) True G109572
TU137200 lncRNA upstream 22844 4155964 ~ 4156206 (+) True G109571
TU137159 lncRNA upstream 143742 3976728 ~ 4035308 (+) True G109541
TU137227 lncRNA downstream 44924 4230234 ~ 4230484 (+) True G109597
TU137307 lncRNA downstream 129321 4314631 ~ 4316465 (+) True G109656
TU137312 lncRNA downstream 143559 4328869 ~ 4329278 (+) True G109660
TU137314 lncRNA downstream 149013 4334323 ~ 4335450 (+) True G109662
TU137306 lncRNA downstream 188838 4374148 ~ 4377377 (+) True G109655
AMCG00006413 mRNA upstream 11098 4160202 ~ 4167952 (+) True AMCG00006413
AMCG00006412 mRNA upstream 27359 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006420 mRNA upstream 44484 4133868 ~ 4134566 (+) True AMCG00006420
AMCG00006411 mRNA upstream 79332 4091688 ~ 4099718 (+) True AMCG00006411
AMCG00006403 mRNA upstream 96884 4079626 ~ 4082166 (+) True AMCG00006403
AMCG00006424 mRNA downstream 2283 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006432 mRNA downstream 69024 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006433 mRNA downstream 166342 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006438 mRNA downstream 256651 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006446 mRNA downstream 303187 4488497 ~ 4496374 (+) True AMCG00006446
TU137203 other upstream 17077 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 23301 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 215054 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 315780 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 538389 3637743 ~ 3640661 (+) False AMCG00006387
TU137384 other downstream 291624 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 339496 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 839585 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 895571 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 895571 5080881 ~ 5098698 (+) False G109795

Expression Profile