RNA id: AMCG00006426


Basic Information

Item Value
RNA id AMCG00006426
length 7351
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00006426
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4200761 ~ 4217871 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTGGTTTGGCGTGTTCGCGTTGCTCCTGTGGGCAGGTTCGTCCTCGGCACAGTTCGtgttCAGGCGTTCTCCTCaccttgtctgtctgtctttatttaaaaataaatcaatagggAAAGATGAAACAAAGAccctgttccatggccaggacCTGTACATCCCCATGACAGAGATCGAGACCCAGGAGTCCTGGTTCCTGCCTAAGTCCCCCCTGATAGACAGGCGGCGTCTGATGAGTCCGGGCCGTGATCTGGATCCCCGCTGTCACCTGTTGTCCAACTTCCTGATTCTGGAGAAGGTCTCGGTGAAGGACCAGGGCCTGTACACAGTGGTGGAGCTGAACTCTACGGAGTACATCCACAACATCACACTGATCGTGAGAGCACCATCTAAAGCACCATCTGACCTGCAGCCCctgcttttgttgtttgttcttgtcgttgttgctgctgctggaccAGACTGTGTAACAGAGCACATCCTGAAGTACGGAGACACCCTGAACATCCCACTGAGCCAGGAGTCCAGCGCAGTGCAGCTGGAGTTCACTCCAGAGGTGGTGCGGCCCCAGGCCCAACCCCAGCCCCAGCCCGAGACCCAGCCCGAGACCCAGACGGAGACCCAGCCCGAGGCCCAGCCCGAGGCCCAGCCCGAGGCACAGCCCCGGCTCCTGATAAACAACAGTGAGGTGATGGAACCCCAGTACCAGCAGAGGCTGGTGATGCAGGGGCATCGCTGGGCACTGCACAGGGTGACGCCGGCTGATGAAGGGGCCTACACGGTGTGGGACACAAAGGGCAATGCCGTGCAGAAGATGTGCCTGAATGTGAAAGAGCATATAATGTTCGTGGAGCTGGCGTACGGTGGCACCCTGAAGATCAACCTCATCCTGGACAAGGCGTCCGTGACGCTGTCCTTCCTCTCGGACAGGGACAAGACAGAGCGGGTGCTGCTGAAGGAGGGGGTGGTCAGCGACCCACAGTACAACACTCGCCTGCATGTGGACGGTAAGCTGTGCACCCTGGACAGCGTCACCACGGCCGACACCGGCTTCTACACAGTGAAGGACCTGACGGGAACGCTCATCTCCAACGTCCACCTTGAAGTGGAAGCCTACAAGCTGCCGTCGCTGTACGTGGCGATCATCTCCTTGCTCCTGCTGGTGCTgttcctgctgtgtgtgtgtctggtgtcCTGCATGAAAAAGATCAAGCAGCGGGCGGAGAAGGCCCGAGCCATCGCCAAGATCACCCAGCAGGCGGACAAGAGCGAGGGAGAGGCATTCAGACAGGTGGTCCACGAAGCGTACAACCGGTTCACGGAGGACGCCACTACGCAGTCCGTGTCGCAGTGGGATGACAAACCATCGTACACAGACGTGACTGAAGAGGAGGGGAAGGCCCCCGAGGTCTCCAAAGGAAGCCGTTACCACACGCTGCCCGACGAGAAGAACTTTCTGGAGAACACCGATCAGGCTGCGGCAGAGTTTGTCATCGCCGCCCTGCCCCTTGACAGTGACACGGACCACCCCATCGCCTCCACGTCGGAGAAACTCATCCTAGACTCCAAAGACTCTTAGGGTCTAGCGTTTTACTtcccttctttttttcctttctattttttttttttaaatctgcgTTAAAGCCAACAGTACAACTCACAATGCAGGCAGGATCCTATTCAGgattttttctaaaaaaaaagcaaaaaaatctCTCAACAAATACATCTTTGATACCTGTGTCTTAGATTTGGTAATACAAAAAGGGAGTTCATTACAGGGTACAGGACTTCATGGTCCCAGAGACAGGAAATTCAAAGGCTTTATACATTCATATCTATGACAGGGTGATAGAAACAAAATCCATTCAGCATATCATCCACATTTCAGATCAGGCTCCCTTTGCTATACTAGTATTCAAGTTTTGAGTAGTGCAGTGGTGACGTCACACAGCGATGTCTATCCAGTATTTATCCCGTCAAAAtaagttttttaaatgaatacagccCTCgacatattttcagttttcatccCCTTTCAGACACGTTGCCAGCGTTTATGCTTGACAGATGCGCTGTACGCAATTCTACGCACAGCAGAAAAAAGTGGAAGGAAGGTTACTTGGTacactgtcattttattttctgtgacgTCCTACAGATAACTCTGCGCGGTCACTTTTAGGCTAGGGCAGCAGGCTGGTGGTTGACGGCTTTAACACTCTCGCGTCGCTGGTGATGAGAAGTCCCAAAATTGAGTCCCCTCCCAAATCGTAGGGGAAAACTTGTACCCAGCCAATGCAGCTCTCTGTGTGGCCCCGGggtgtaaatatgtaaatacgtCAGAATGACAAACTGCATCGTCATTTTAACTGCGAACTTAAGATGAATACTACTAGTATGGaataattcatgtttattatttatttattatttttactgacATGCCAATTTCAATGAgggtaaaaatatattacttcaCATTTGGATCGTGATGGCTCTTTGTATTagttaaagtatttatttatttagctaaGAATACAAGAGACCATATGAAAAACGTCATCAGAGGGGTTACAGCTCCAGCATGTTCTGATTTTACTTCCTGCTCAGTTCTTATAAGATGATAAGATGAAGAACAGACGAGGTCTTTGCCAAAACCATCCCTTCAatgtcacacatttttaatagttCGCTTGATTGAAACCCCACCAATCTGCCTCCTGAGAAGGAAAACTACAGAGAACCGAGGGTTTGTTCACAAACCGCACCTGCCTGCCAGGAAGAGCATGAATCGTGTTTGatttcataacattttcaacaattcGTTTGTCATCGTATGATCACATTTCAGATGTAACACTTGCCACTTCAGTTGAGCATTTCATATCATACCAAAACTAATACTTATAATacattagcaaaaaaaaaatgtagctgcAATGTTAGTTCTATGCAAGCATCCCCTCTGGGTCATTTTAACTTCTCatttcttctggaaggttcagGTAACCAGCAGTTTCTAATCATCCCCTAATACATGCCCACAAAGTGCAGAGAAATTAGATCCTGGCTATACTTTTTGATGGGGGGGGAAGGACTCAAAGTAAAGATCCACAGTCTCTTGGATTTTATGGCCAATTATTTCCCCCTGATTCACCATGTCTCAATGTTTACCCCACACCATTCTGAAGATGTGTGTTCCCAGCAGGCCTTTGCTTGTAAGGTATTTGGACTGATGGTTATGGTGGTCCGACATCGTTCTACCCTTTGTCTGAATCAATGGCACTAGTCGGCGATTAATTTATATCAATCATTCACTGGACTCGCCTTGAAGGCCACACAACTTTTGTCAATGATGTGTTTTTAAGAGTTAGCTCCGCCTAAAGGAGAACTGTGGATCAAATTGAATTGAGGCGGGATTGGTGAAAGCTTTGACCGACACTCCATGGGTTTCTGCGCAGTGGCATTAGTCGAGGACCTCTGCTGTCTTATCTCATTTTAGTCAACTGGGATTGTTACTGTTTTGTCCAGGTTGAATGAACATGTTTCAAAAGAAGGGTGTCAATACCTTCCACTTCAATAGTGTATAAAAGCAGTGGCACCTCTTTTTTTAAGCATGATGGGAACGTGTTAATAGTCATGCGGGGCTCTTGGAAACTCTGCCCTTCATAATGACATTTAACCGCAAACAGACGTTCCCCCATACTGAGGTACAAGCGATACGTTTGTGATGAGGttgccaatttatttattttttaggagaGGGGGGGTGTTTTGATGTTTTCTCTGCACTCCAAAACAAGCCACTGCCACAGTATTTGTAACAAAGACTTAAAGAGCAATACTTTGCAGTGTTTACACGTTTGaccttttaaaaatgcacacacacacatacaagttCACCTGCTCACTCACACAGACCCAATACTGGAGATCGGTTATTATAATTAACTCGATATGAACCACAGTGATAGGGTCACTCTGCAGGGCTCTGTGATTCTAGCGTGGTGAGACACCTGAGCAGGATCTCCGATTTGCCACAAAACATAAAGCACTGCATGTGTAATTAGAGAGAAGTCTGactgaattaatattttcactgtatAGCCAACAGTTATGGCCATTAAATGAGTTATGAGATATGATGCTCCTTGATcagttgcatttcacaatttgatGTGAATTTCCCCCTTCATTTCTCCTTGCAAGGGGTTCCTTGACTGTAAAGTCAATACTCTTActttgattaaacaaaaatggcCGTATTTCATACCCAAGTTGGTCAATGCTTAAACTGTTGTTTGCAACCCATTTTGCACTGATTACTGTCCTGTTAGGGGGACTTTATAAGCGGCGCCCATCTCACAGTCGTGCCACAGCTATGGAGCCCCGGTGGCTGTTGTGACAACTTTATTAACTGTACATATTGCATGTCTATCCTATGCATTTGATTATGCATTTGTGAATGTTCCTTATATGCCGAAGAGACATATTTGTAGTATACTAGCAAATAACTTTACAAAGGGCATTATATAACCTCCTCCTGCCCCCACCGCCCACAAGCTCACCCCCTTGCTTCTGATCCCTGCACCCCCCTGGTCAGACTGGAAAGATACAATTCTCCCATTGTGCTGGTTTCACAGTGAAAGAGCTTTACACCTTTAGGGAGGAATGACAGCCAGTGCTGAGATTATCAACGGCTCCCGGGCGTTGAACCCTGTCACTTCCACCAAAGCGCTCCACCCCttcctacccccccccccccttccccagaaagcaaataaatacatttcttagaaAACCCCCCTTCGCATGCTTTGAACTTGAAACCCAACAGGTATTATTTGAAATGGCAAGAGAGCTGTTAATCACTGCTCAATCGCATGGTGCAGCTGGCGCACTGTTAGGCTCAGTGTCAGGCTGTGCAGTTTCTCCACCCTCAGTCGGTGACTTTGAGACAGTATTGTCCGACAATCTGAGTTGAGCCTTGCCTTGTTTCGCACACAGACTCTTGTTGGAAATGATCACTCGGTATCTGCTACTGGATACTGTTAGCACGAACCAGCCAGTGTCACATAGTAAATATTCCCCACCTTTGGAAACTTCCTGTCTTCGTGAAAGTTTGCCACAAATTTGCATGGAAATGTGGCAGATTCCCCAGTATTTTCCCAGGGTTGAACTTTCTGTTGCATGGAGTTTCCGTGGTGTGTATCATGGTCTAGTCAGCTATTATTTCCTGTTTCACTATGATttctaataaacaaataaacgtTTCTCTGTTAATGCGAATGTCACTTGTAGTAGATCCACATAAACAAGAAATACTAGCCTGCGAACAATCTACCACCTATCGATGGCGTAAAACCAATTACATTCACGTATGTGTCTTTACTTACATTGCTGTGAAAAGCTCTTCAAATAAAAGGGGCCCTGAAATCAAATCCACAAGCCCAAACCATTTAACAACACGGAGATAAAACACTCAGGAAGAGACGGTTCAAACTTAACTGGGGGGTGGATACTGACCATGTGCCAGGAAGTGTCAGGGGGGAACATTAATCACGTGACACCAGCACGAGTTGGACGACAGGGAGGTGGCATTGCAGCCTGTTGTCTGTCTGCGATGGTGCTAAAGCTCCCATTCAACTCTGGCACTTTGCACTCTGCAGAAAGTTTCCTTAGTTACATCTTCATATATATCACTGCTCCCTCGTCCCTGCTCTTAAAATGCTACACCAATAAGGAAGAGAATGTTATTTTGATAATGCTACATAGACATAATAggtcaatttaatattttattattattactatgttgttatttataataataataataatcatacatgaTATGTACAGTCCATCCCTATGGAAAGGTGTTCATTGCAGAGAACAAAAAGCATGCTTATTTTCCTCttgatctttaaaaatatgttgcaTTCAGTCAGTGTTTATGGACGCTACGTTCCTACAAGCGACACATGGTATTAGTTTGTTTGAAAACACAGACAAGATATgtcttataaaatgtaaaaagactGTAAATAAGCTTTGATGATCTGGGGGAAAAAGCGCCTGATTCCAGTGGAAAGTGTCTGAATTACGCTGGTGTGATCGTCAATGTCTGTATCGAAGTGAAGAAAAGCACACTGCAGTCCCAATGTTTCTGATAAAGGTAGTTTACAGTTTTCATGACAAGTAATAAGAACGTAAGGACTTCAGACAGACAAGGGGAGGCCTCACCCCCATCTAGCTGTTTCATGGGTCTCTTTCAATGACACAGCTGTGTTATTTGTTCCACAATCCCACAACCCACAGTGTAAAGCAGGACTTCACATTTTCAGTCTTAAAAGCACTCTTTGTTTGCACCAGTATCCTcttgtctgtgtgtcactgtccaagTCATGAGAATTTCCAGCACATTCTTGTGAAAGGACATTGATTGTAGTGTGGGACCCTTCGTGAGATTTCAGAGAATTGCTAAGTGCCAAGTGTGCTTTCTCCATTCAGAGAATAGTGTTTGTTCGATCAAATATCACACAAGGTCCTGATAGCTGACTCTGCCTGAGTTGGGCTGGGTAGGTGTTAAGAAATTTTAGAAATCAGTCACTTTAAACTGAAATAGGCCCAGGTTTTCATAACTTTCTGCCAAAGTAGCAAAGTAAATTGTGCCTCCGAAAATATACGATCCCTTAACTCTGTGTtctgatatttttaatatttcaaaggtTGTGGTTGTTAAAAGCTATTCACCTTCAGTGTCATTAACTGATCATTATAGGTGTTTGTGATGAGAATTTCATACCAAATCGTGGATCCAAAACCTGCTTCTAAAAGTCATGTGAATGGCAAGTGGTCCAAATTTGTTCCAAGGAGGGCACTGAAAATAGTTTCCCTGGGCTGTGAATATAAGTGTTGTTCACAACCTCCCTTGATCTGAAAATGAGAACAAACAGACCTGGGTTCTTCTGAATACGGACTTTGATACACTTTGCCAGGATAGCCTTAACAGTGATAGGCAAAATGATGAATGATTGAACATTGTAGTGCTTGGTTAGCCCACCGCAAAACGAGAGGAAAGTCAGTTACCAGCACCTTGCGACTCTGCAGACATGCAAGTCAAGGGAAACGAGGAGTGTATGATATGAGGAGCTTTTTTCACCGAGGAGGGCGTTTGATTAGTTCGAAGATCCAGTCTCTAAGACCAGGGTACGAGCTCGTGGGAATTCACCTTTTGTCTTTTGCACTGACTTCTGCATACTCTATACCATGTGCACCTGCCATCGTCTTTTAAATTTTTTCTGaatgaattcaataaaaaaatcatgataaaataaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137280 lncRNA downstream 31649 4168050 ~ 4169112 (-) False AMCG00006415
TU137279 lncRNA downstream 33522 4166951 ~ 4167239 (-) True G109635
TU137278 lncRNA downstream 34172 4166328 ~ 4166589 (-) True G109634
TU137276 lncRNA downstream 36204 4163982 ~ 4164557 (-) True G109632
TU137273 lncRNA downstream 47180 4152911 ~ 4153581 (-) False AMCG00006414
TU137257 lncRNA upstream 48956 4266827 ~ 4268470 (-) True G109616
TU137298 lncRNA upstream 57458 4275329 ~ 4276386 (-) False AMCG00006429
TU137341 lncRNA upstream 90302 4308173 ~ 4311951 (-) True G109689
TU137350 lncRNA upstream 126516 4344387 ~ 4349812 (-) True G109692
TU137406 lncRNA upstream 296439 4514310 ~ 4515575 (-) True G109735
AMCG00006425 mRNA downstream 2966 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006431 mRNA downstream 7611 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006415 mRNA downstream 23709 4169037 ~ 4177052 (-) True AMCG00006415
AMCG00006414 mRNA downstream 42638 4152816 ~ 4158123 (-) True AMCG00006414
AMCG00006421 mRNA downstream 59127 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006430 mRNA upstream 4207 4222078 ~ 4230525 (-) True AMCG00006430
AMCG00006427 mRNA upstream 15793 4233664 ~ 4242559 (-) True AMCG00006427
AMCG00006428 mRNA upstream 27314 4245185 ~ 4251723 (-) True AMCG00006428
AMCG00006429 mRNA upstream 52545 4270416 ~ 4277155 (-) True AMCG00006429
AMCG00006435 mRNA upstream 96851 4314722 ~ 4330918 (-) True AMCG00006435
TU137277 other downstream 35161 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 1870770 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2070506 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2176618 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2318924 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1796233 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2567442 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2860518 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4504517 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4569947 8787818 ~ 8794062 (-) True G110520

Expression Profile