RNA id: AMCG00006428


Basic Information

Item Value
RNA id AMCG00006428
length 2727
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00006428
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4245185 ~ 4251723 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGAGAGAAATAAACAGCGGCGGCGGTGCAGTGATGGAGACACGGACAGCCGCCTGTAGACACGCCGGGCTGGACATGAGAGCCGCAGCGTGTTATTCAGCCCACACGACCGCCCGGACGAGCGGCCTCTTCTCTAGCCATGACTGAGCGGAGCTACGCAGAAATATAGAAGCGCGGGCAGCGGGGCAGACATGTACGCCGTGGTGGAGTTCACAGACACGCGGGAGGTGGAGGTGATTCCCGCGGCGTGGCTGGTAGACGACTCGCACTGTTTCTGGCCGCCCTTCCGCTCGGCCGTCAGGGCGGTGCAGACGCTGATGCTGCCCGACTCCGCCTGGATGCTGTACGCGGTCAGGGTCCTTCACAAGACGGATTCCTATGCCAGGGCCAAGTCACAACTGAATCACTACAGTTCCTCCCCCGATCGGGCAGTGACAGCGGAGAACCACACAGCCAAGGAAAAGACCTCCACGTCGGCCTCGGAGCTCGAGGAAGAGGAGCACTCTTCCTTGTGGGAGTACCCGGACACCCCCTCGCCCAGTCAGGGAAAGCCAGTCTTAGGGGGCCCCCTCCCCGCCGTGGGCCAGACTGTCTCCCCCCAGCAGTACAGCTCAGCCCTGCAGGCTGCTACACCGGCTGATGGGCTACTAACAGCCTTCGAGAGGAAGGTGCTGTGGAGTCTGGAGGAGATCCGGATGCAGGTGGCCCAGAACGGCAGGCTGCTGTCGGAGCTGCTGGCCCGGGGTGGCGACGGGGACGAGCTGCTGCTGGCCGAGAACCTGGGCTTTCCCCTGGGCAGCATGGAGGCCGTGGACCGGCTGGAGGACAGGCTGGTGGACGAGGCCTTCGGGAACGCATTGgtGTTCAGTCTCTCGGCGATCGGGGGCGCTGACGTGAAGAGCGCGGTGGGGAGAATGATGGGGGCGGTGCTGCAGAACTGCCTGGCCTCTCAGTTTAACTGGGTGGGGAAGGGAGGGCAGAAGAGAGCCTTCAAGGACCTGCGGCTGAGGAAGATCATGTTCAGAGCCGTGCGAAGAAACGGTCCCACGAGAGAGACCTCGGAGGACGAGTTCACATCGGTCGCCATGAACTGGCTGCGATATGCCAAGGATCGGGGCGGGGGGCGGAGGAGGCGGGCAGAAGCGGCGGCAGCCAAAAATCAAGAGGAATCCGGCACAGACTATCAGCCCGAGCACAGCTCTTGATCACACAGAACCAGGTCGGGTCCAAATGCCTTGACAGAGACTTTTAAATGGAAAGGAATAGCCCTTGTACTGACAGCGTTCCTGTCACACATGGAGTGGATTTCTACACTTGAGTGTTCCTCTTTAATTGGAATTGTCCAggttatacaaatatatatttacaaatacactGTTTCATCACCAGTGTGGTTTCCAACAggaattcattaattcattcggGATGTCCAGATGGCTGTGATGTCATTGGGCCCCTGTATCTATGTAAGAACATAAAGTATACAatccagaggaggccattcgccccattgtgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtctgtttttcaatgtcgcaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtttgaagaagtgtctcctgttttctgtcttgaatgccttcaagctcaatttccatttatgtccccGGATGCGTGTGTCCcggctgatctggaaaagctcctctggtttgatgcctttcatgattttgaagacttgaatcgaatctctgttccaaggtgaaaaggttcagtccctcagtctctcagtaggacattcccttcagacctggaataagtctggtttctctcctctgaactgcctctagagcagcgatatctttcttgaagtctGAAGCCCAGagctgtccacagtatccagatgagctctaactagtgcattggaCAGTCTTAGTGTGTTGGTGATCTGACAGCTCTTGCTATTTAAACACCAGTTGTGACTTGTAATAAGACTGTTTAAGACCTATGAAGAGACTCCTGAAAAAGCACATAGTGAGCCCTAAGAGCTGAGGTTCACCGGTTTGATCCAGCTCATGTCATAAGCCGATTGTGACTAGGAGCGCTCAGTGGTGGTGCACGATTGGCTCAGTACCGCCCGGATTAGGGAGGGTTAAATGGGCAGGGCTTGTCTCAGCATGTCAATAACGAACGTCTCCTGCCGGCTTCCTGGGCACCAGCAGTACCACTGGGAGGGATGAGCTTCACCTCCAATCGACACTGAACGCTTCATGGTGCAAAGAGACTGGTGGCTCAAGGACGGCCAGGTCACGCTTACTCACCCTCCCCACATGAAGTTGTGGAATTTGTAAGCCAAGATGCATTAGTATGGTCAGTAATTCCAAAAATtagaggggggagaaaaactcaaaataattggtgattccaataaaataaaaataaaaacatgagagaAGCTAGTTGAAAATCAGTTCTCAGAGGGGCCAGCATAAGATTGATTGTCTCAGCTGGTAACGATGACACTGAGAGGCAGGGCCCTGGTGATGTCACAGTATGGCACAAATGGCCACCTACATGAACTTGTAGCCAGTGTGACATCCAAGTGCTGATGTCATTATCAAACAAGTCGTGGGCCGGGTTCTGGCTCCAGTTtgggaaataaaacacaagcacctgactgcttttattttaaa

Function

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137280 lncRNA downstream 76073 4168050 ~ 4169112 (-) False AMCG00006415
TU137279 lncRNA downstream 77946 4166951 ~ 4167239 (-) True G109635
TU137278 lncRNA downstream 78596 4166328 ~ 4166589 (-) True G109634
TU137276 lncRNA downstream 80628 4163982 ~ 4164557 (-) True G109632
TU137273 lncRNA downstream 91604 4152911 ~ 4153581 (-) False AMCG00006414
TU137257 lncRNA upstream 15104 4266827 ~ 4268470 (-) True G109616
TU137298 lncRNA upstream 23606 4275329 ~ 4276386 (-) False AMCG00006429
TU137341 lncRNA upstream 56450 4308173 ~ 4311951 (-) True G109689
TU137350 lncRNA upstream 92664 4344387 ~ 4349812 (-) True G109692
TU137406 lncRNA upstream 262587 4514310 ~ 4515575 (-) True G109735
AMCG00006427 mRNA downstream 2626 4233664 ~ 4242559 (-) True AMCG00006427
AMCG00006430 mRNA downstream 14660 4222078 ~ 4230525 (-) True AMCG00006430
AMCG00006426 mRNA downstream 27314 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006425 mRNA downstream 47390 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006431 mRNA downstream 52035 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006429 mRNA upstream 18693 4270416 ~ 4277155 (-) True AMCG00006429
AMCG00006435 mRNA upstream 62999 4314722 ~ 4330918 (-) True AMCG00006435
AMCG00006437 mRNA upstream 83949 4335672 ~ 4336182 (-) True AMCG00006437
AMCG00006434 mRNA upstream 115527 4367250 ~ 4368596 (-) True AMCG00006434
AMCG00006436 mRNA upstream 124958 4376681 ~ 4387311 (-) True AMCG00006436
TU137277 other downstream 79585 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 1915194 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2114930 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2221042 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2363348 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1762381 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2533590 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2826666 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4470665 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4536095 8787818 ~ 8794062 (-) True G110520

Expression Profile