RNA id: AMCG00006435


Basic Information

Item Value
RNA id AMCG00006435
length 8696
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00006435
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4314722 ~ 4330918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCTTGGCTGGAGAGTGATTGATTGGCTCCCCGGTGCAAGAGTTACCAGTTTCCTGTCCGGAGGGATGGACGCCACCCAGCTGATTGAAGACCTGGTGCCCTCTGATAgacaggaggaggaagaggaggaggaggagagaggcgGGAGGAGGAAGCCGCTGGGGCAGTTGAAAGTCTTCAGTAATGCTCATTTTAAAGAGATGGATTTCCCCATCTACGCCGGGGAGAATGTGATTGGACGAGAGCCCGGCTGCGCGGTGACGCTCCCCGCCAGCTCCATCTCCAAGCGCCACGCGGTCCTCCAGGTCCACCAGGGGGAGCACCTGCTGTGGGATTGCGGCAGCCTGAATGGCACGCGCCGCGGCCGTGCCCAGCTCACCCCCCAGGTCCGCTACAGTCTGTCCCAGGGAGACCTCCTGGTGTTCGCCGACCTGCCCTGCCAGTACACCCTCCTGAAGAAGAGCGAGCCCCCGACGCTGCCCCCCGGCTCCGCCCCCCGGGTCCGATCCCAGCCCCGGCGCCAAGTCCGGCCCTTGGCTCTGGAGAAGACCCCGGGCCCTGTGCTTTCTCTGGTCCCCGAAtcggatgaggaggaggaggaggggaaagacGGGAAGGGGAATGTGTCAGgatttTCAAGAGGAAAGGGTCCCAATACTTCTGCCATCTTGTCTCCGATGAGCACCATTATCCCAGAGAGGTGTGGGCTACTGCAGAGCAGCGCTGAGGGCAGCTCGATCCTGGGGGGGAGAGATCCAGTCAGGCCGCAGCCGAACGCTAAGGAACCAAGAAGGAAGAAACGAGCCGgagggaggaggatgaggaaCGACTCGGGGGAGAGTGACTCTGAGGGAGGGGAGGAGTGGACCAGCGTGAAAGACAGACGGGAGATGGAGGAGGCAGCGGAGACAACAGCCAGGGTCTGTGCTAACGGAGAAGGAGGATCAAGAGCGGGTGTCCCTCTGTCAGATCAGTCGGGCCTGACGGGGGCAGGAGGGAAGGGATGCTCTTCGCGAGTGAAGCCACAGGAGGCGTCTGGCTCCGATTCAAGCGCTCAGAACAGACCACAGGAGCTCCACGAAGGCAGGGCAGAATCAGGCGGGCCAGCCGACCTTCACCTGGACAGCGACACCGATGTCGAGGAGGAGGACTCGAGCAAATCTCCTGAAGCTAAGCGGCAGGAGCCCGGGGTGGTGGCGGAAGAGGAACTGGAGGCCAGGAAGGAATTTGAGAAAGCTGTGCCAGAGTCGGTGAAGAAGGAGAAGGTCTTGGCTTTCCATCCAGACAGTGACACAGATGTAGAGGAGGAGGATGTGAGCAAACCTCCTGAAGCAAAGCGGCAGGAGCCCGTGAGCACTGCTGTGGAGAAACCAGATGCCGGGGAGATATCCAAGAAAGCGGAGTTGGAGCGGAAGGAGGGGATCCTGGCCTTCCATCCAGACAGTGACACAGATgtagaggaagaggaggaaccAGGCCATTCTCCTCCACCCAGAGGCCAGCCTAACCTGTCGCCCACCCAGCACAGAAGCGGGGGAGATACCCCAGCCTTGCACCAAGACAACAGCGTTGATGTGGAAGAGGAGAAGATTGACCTCCCTTCCGATCTTGAGGCCCAGCCCCCATCAGCACCTGATTCTAAACCCCAAGAGCCCACGAGCACAGCTTTGGACCCTGGCGCCTTCATCCTGGACAGCGACACCGATGTTGACGAGGAGGTGGAAGAAGCTCCTGTAGGAGAGGATCACGGACTCCTGGCCTTCAAACCCACAGAAGCTACAGGACCCAAAGCAGGGGACTTGGCTGGAGGTGCTCTCTGGGAGGAGGTGCCTGACAAGCAGGGGGAGATGTCAGGCCTGCCAGGGGGAGACCGGCACTCTTCCTCCAAGGCCGGGGGGGATGTGGACAGTGACACGGATGTGGAAGCGGAAGAAGAGGTAGGCAAACCCAGAGCGGCTGTGGCTCCCAGTGCCCTCAACCTTGACAGCGACACTGACGTAGAAGAGGCAGAAGATGATGGGGGTTCTGACGGCAGAGGTCAAGCCACTCCAGTTAAGGAGGACACTGGGAAGGACAATGACACTGATGTGGAACAGGCCAAGGACATCCCAGAGAAACCCCACAGCTTGGCATCGGAACCAAAGTTGGACCGGCCGCTCCCAGCCAACAGAGGCACGGTTGCCGGAGGCTTCGAACTGGACAGTGACACCGACGTAGAAGATGACCTCTCAGATTGCCCGGCCTCCCCCAGAGAGACAGGCCTGCCTGGGGCTCTCCAGCAGTGCTCCACCCCTCTGGCCCCTGGGGACTCTCCCTGCAAAGCGGTGCTCTTCCAAAGTGACACCGAGGCCAAGGGGAAGGCAGAAGGTCCAGGAGGCCGCAAAGGGGCCGAGAGTGCCAGGCACGAGCGACCAGGGAGGATAGGCGCCCAGCTGCTGGGACAGCCGAGCAACTCTGACAGCGAGGGTGGAGACAAGGAGGAAGAAGAGACTCAGGCTTTCATCCCCGAAGAGGACCCCTTCAGACGTCCTCTGAACCCTCCTAGCCTGCCCCAGTGCCACCcagtggtggaggaggaggaggaggaggatatGGTCATCGCCGAGACCCAGTCCTTCATTTCACCCAGGGAAGACATCGACTCCAAGGACGCCGCTCTTGAGGCCACCCAGGCCTATGCGTCCCAGCACCCCCCGGACACGGAGGACCAGCCCACCCAGGCCTTCACCTTCGACATGGGCCCCCCCAAGTCTAGCCCCCGCTTCCCCCGCCTGTCGCACAACGTGGCCGCAGACGCCACCCAGGCTTTCCTGGACACGGATCTTGAGGAGACCCAGGCTTTCGACATGACCTCTGCCGACACGCAGCCCCTGGGCGGCCCTCTGGAGGACACCCAGCCCATGGGCTTAGAGCTGTCCGAGACCCAGCCTGCTGTGACCCAGCAAGGATTGGGAGAGCAGGCATCTGAGCAGGGGCAAAGCCAGAGCTCCGAGCTGTCCTCCGCCGACACGCTGCCCGTTTTCCAATGGCGGCAGAGAGGCAGGGGTGGCGGTGGGAGCAGTGCCAGTGGGGGCACTTCTATGGACGAGGGCGACACTCAGGCAATGGACTCTGATCTGGACTCTCACCTCTCTACTGCCGACACGCAGCTCGTTCACCCGAGGGGCGTCGCCGCACCGGATCCGGTAGAACCGCCTCGGCAGTACCAATCCGACACCCAGCCTGCACCTGTTCCGCCCCCCCAGGACCCACAACCGGGGCATCAGGGCAACCGCCTTTCCCCCATCACCGAAGAAGGGTCCGTTACCTCCAGCGCCGGAGAGAGCTGCCACGCCAAGCCAGACATGGATACTTCGGCAGCAGCACCAGACGCGCCCAGTTCACCAAAGCAGGGAGAGCGGAATGGTTCAGGGGTAGAGGATAGACCACACACTGGACAGTCGGGAGCTTTGACTGCCCCACAGGAGGAATCGGCTCAGAGTAGCCTGGAAGTGGAGTCCACTCACTCTGAGAAGACGGCATCTGGTCCCACAGTGGAGATCGGAGTGCCCTTAGGTAGGCAGGGTAGCGGGGAAGATAATGTGGATGAGTTGGATGCTGCTATACTAACCCCACAGCAAGCCGAGGAACCCACAGCGCCTGTTGCCCTGCCTCCTGCGAGCATTTCACAGCGCGGATCCATGAGGACTCCCAGGCAGGCCAAAAAGACTCGAACGAatgtggaggaggagggtggggaGAAGCAGGGAGTGGAGGACAAGACAGAGGGGGTGGCTCTGAGCTACAGCCCAGCAGAGGAGAAAAGGGGCCAGAGGCGAACCAGCAGGCTGAGGAAGAAACGgcaggagagggaaagagaaggagtggaaaaaagaggaggaggaggaggtggggcaGATCTGACCCAAGACAGCAGAGGGCAGCCGGTAGTTGAGAAGGCCTTGGGAGAGGCTGAGGATGTGGGGAACGATGGGGGTACACAGAAGAAGAGGGAAGATAACAGTGAGCCGTCCTCAGAGACCCCTGTGAACCAGGACATAGCCACAGCTGCAGCCCAGGTCCAAGAGGGTGCAAAGGAGCAGGCCAGTGAAGGAGAGGCACTGCCCAAGATTGCATCTATCTTCCTCAGGAGATGCACAGACACTCAGGACAGCCCTGGCGGCAGAAACAGCAGGAAGTTGGGCAAGGGTGTGTCGACAGCCGGGGAGAGCTTGGGCGCCGGAGGAGAGACCTCGACCAGAGACGGGGGTGGTAAGCAGGGAAGGAGAGCCCAGGAAGTGGAGGTCTCGGATGCCCTTGGCAAGGTGGAGGCAGGGACGAAGGAGAGGAccgagggagaggaggaggaggtccAGAGAGAGGCTGAGGAAACACCTAAAGAGGTGGAGAGCAGGGAAGAGAGTGGCAGAGACACCCTTCAGAACGCAAGGTCTCAGAGANNNNNNNNNNGAGAAGTGGTGGCGCCCTCAAAGGGGAGGGGAGGCAAGAGGAGGCTGATGTCCAACAGCAACAGGGACGGGGGCCTGCTCCTGGACCCCGGAGATGCCTGTCCTGAGACCAAGGGGCAGATGGCAGCTTCAGATATTAGGGAGGGGAGaaaggaggaggacgaggagaaGAACATCAGCAGTACAGCTCAGGATCTTGTGGGGACTGTTGAACCTGTGGACACTGTTGAACCTGTTGAGACTGCTGTGGACAAGCAGGAAGCTAcagaagaaggagagaagagCTCAGGGGCCAGGAGAACAGCAAGGGTCAAGTCGCTCTCGAAAGCCACAAGAGGAAACCTGAGGACAGGGCAGCCTgccggagggagggaggaggcaAGTGGCGAAGGTGGCAGCTCGGCAGCCACTCTGACCACAGACCCAGAGGAGCACAATGACAAAGAGCCTGTTAGTGAGGCTGCAGGAGGGCCCGGGACTGCCAAAGTGGGTGGCACTCAGTCTGGCTCGGGATCGGTCCAGTCTGAGGCAGTTCCCGAGCAGGAGGCAGCAGTGGAGGGGCACCCAGGGGCCCCCGAGACACCCCAGACCAGACGGGCAAGCAGAGGCAGGGCAGGTCCCTCGAAAGCACAGGCTAAGGGGAAACAGAGGACCAGGCGCAACGAGGGAGCAGAAGGAACGTTGGAACCAAGCGGACCCTCCGAGTCCGCAGAGGCCACGGAGCCTGCATCGCCGGGGATTCCAGAGATGGGGCACACCTTGGCGGGCAGCAGGAGGTCCAGTTCAGGCTCTGTCTGTTCCCTTCGGTCTGAGCAGGAAGGGGGAAGCGGGCAGGAGATCCTGAACCCTGCAGCCCAGGCAGGACGAAAAGCAGCGCCTAGGTCCAAGAGACAGGCCAGGGACAGGGCTGCCCAGCCGGACGCTCCCGAGAAATCtacgggaggaggaggaggagggaggaggagcaCCAGGCGGGGGCTGGTAGTGGGGGAGGAAGCTGATGACGGTGGGCCAGACAAGGCACTGGAGACAGAATCTCCACCAGAGAAGGATGAGGCGCCAGCTATCGCTGTCGAGGTGCCGGGGAGGAGGTCGCGCTTGGCGTCGGTCAGCTCCAACCAGTCCGAGAGCAGCGCCGAGCAGACAGCCGGGGGCAGGAGGAGCAAGAAGAGGGCCGCCAGTCCCGGGGAAGCTGCAGACGACTCTCGGGACCCAGACGTCAAGGTTTCTAAAAGGGGCAGCCGGGCGGGAGGGAGGTCCAGGGCGGCTGTCAGGAAAGCAGAGGAAAATGGGGAGCTGGACAGTGCGGGTTCATCGGCGGCAGGAGAACCAGAAGAGACTAAAGAACCCGGGTCCAACCTACAGGTGCCCGGGCCGTCCAAGAGGGGCGGTAACAGGAGTCGTTCGGTGGCAGGGGGCGTCCTGGCGGAAAATGTCCcacagaaagagaaggaggaagaaaagaagGAGGTGGCGGCACCAGTGCGGAGTGGGAGAGGTCGGAAAGCGGCAGCCCCCCCCGAAACTGAAGTAGGGGAGGCTGTGTCTGATCAGGCTACCACACCCAGAACTCCCAGGAGGGGACAGAAGAGGCCAGCTGGTGGCAAAGGGGAATCTGTGTCCTCTGAGCCGGCGGAGGAGGCCTCTGAGGAGGGCGACTTCAAGGTCCCCCGACCCAGAGCCAAGCCCCGGAAAGGGGGTACGGAGGAGCTGGACGCTGGGTGTTCCGTGGAGACGTGCGCCGCAGGGAAAGGCAGGGGGACTAGGGGCAGGGCCTCTCTAGCCACCGTCCAGCCAGCCAAGGATGAGCAGCAGGGCCCAGGGAGTCCGGCGGGGGCCAGCAGCGAGGAGCAGGAGGGGAGGGAGGCTGAGACGCAGAGCCCTCAGgctccCCGCACGCCCTCTCCTCAGAAATCCAACAAAGCCTCCTCCAGAAAGCGCCCCCCCCAGAACCTGGATTCCACTCCCCCAGAGGCCAAGACCCCCCGGGGCCCTGCAGCCCGAGCCGCCCTCTCTGGGGTGAGCCCTAGAGCAGCGGCCCCCACCAAGGTGCTGTTCACGGGGGTGAGGGACGAGGCGGCAGAGGAGGTGGTGTGTCGGCTGGGGGGCAGCATGACGGAGGGGGTGCACGACTGCACACATCTGGTGACCGACCGCGTGCGACGCACTGTTAAACTGCTGTGCGCCGTGGCCAGGGGCGTCCCTGTGGTCACCACACACTGGCTGGACAAGtgtgggaagagcggGTGCTTTCTGCCTCCCAGCGGCTTCTTGGTGAAAGACATGGTCCAGGAGAAGAACTTCAACTTCAGCCTGGCCGAGTCCCTGCTGAGAGCCAGCAAGCAGCCCCTGCTACAGGGTTACGAGATACACGTGACACCCTCGGTCAAGCCAGAGCCAGCCCAGATGAAGGACATCATCGTGTGCAGTGGTGCCCGCTACCTGCCCAAGATGCCCACGGTCCATAAGGAGCACACGGTGGTGGTCTCATGCCTGGAAGACGCCACCCGCTGCCAGCCCGCCCTCCGCGCCGGTCTACCGGTGGTCAGCGCAGAATTTCTGCTCACCGGCATCCTGCGGCAGAGTGCCGAGCTGGACTGCCACTGCCTCACCGGGCCTGGGTTCGAGCTCAAGGCCGAGGCTAAagggcgaggaggaggaggccggAGAAAGAGGTAGGCACCTGCACCAGATGGGAGAAAAGGTGGTGTTGAACTCGTGCCTTTTGGAGCCGCGCTGTCGTCCGGTCTGCGTCCCACACTGGAGTTTTTCTCTCGGCAGCCCTTTCCCACTGatctcacacagacagataaGATTGAGCACACCTGAGCCCTGACTCTGAGGACCTATGAACCCTGCCGGTTAGAAGACCCTACAACCCCAGATTGAGAGACTGCTGGCCTCAATGAAACGAGACTTTCCTGTTGCTGTGCGCTGAAGTGCATTGTGTGgatatgaattaaaaacacaaggtttTAAAAAGGTCTGTCTGTAGGGCACCATTGCTAagttattaaaacataagaacaagTGTAGAATCAAGTGTATAATAAATACCTATGatacaatatatacagatatCTGTGTGTGAACTTTGATCGTCTGTGAAGGCCGTGTTTTGGTACTGTGCTCGTTTAAAAGTATCATGCCGGTGCCTTGGCATGTTCTCCTTTTAACACCCAAGGGGACCAAACCTAGCTGTGCTGGAGAACCCGACATGCCCACTGCTCCTCTCACGCTGGCACCCCCCACCCGGGTTGGGACACGCTGCCAGGCCCGGGCAGGTCCACACTCCCACCCCGCAGTTTCAAGAAGCGAGTCAGTTGCCGGGCCTTTAGTCTCGCTCTGCCCGGGTCAGAGCTGAGGCAGGCTGCTCTGGCCCACGTTGACCCACTTCTTACCCGTGTTCATGCTCTTGGTCTAATGAAAACGAGAACCTAAAAAAGTGGGCCAGACCCCAGGCTGGTGGGCCCACTGGGTTGGGAACCGCTGTGTAAGaaccaataaaaacagaacaatcaTGATTCAGAACAGCTCAGACAGTTGGGAGCATCGTATGTAAAACCTCCATGAGATGCCtttttttcaattgcatttaCTAAAATTGAATTATTCAGTTCTCCAggaaaattgaaatgtatgtatttttttaaatgctagtTTAACCTTTTAAACTCCTTTTAAAACGTATCTTTCTTCTGAGCTGTGCATGAAGAGACTGAAGCTAAGAGGGCCAGAGAGTTTTTATTGTATCTGAATGGTGAAACTGCTTAAATTAGTCGATTTACTGATGTAATTGGTGGCGTGTTCCCGTGCGCTTGGTGACGAGAGATGCAGAAAGGCCTGTAACACCTGCTGGTCGTCTCTCCGGGAACACGGCTGGCTCTGGGTCATAGCAAAGGCTGCGTCTTTCTCTCAGGGAGAAATGACAATATGGGAGAAACGACGCAGACAAGTAGAGCTCAGCTGGGCTCACGCTGCTCACGTGGGGTAAAGTACAGCGATTGAGTCGACCCCTGGGTTCCCAGCATGCTCTCTGCCACAGTCAGGCCCAGAGCCCCTCGGCTTTTCATGGaatgtgaattattttgtttgtttgctttatgaCAATTGAAGAATGTAATCTGGAGAGTCACGCCTCCCTCTGCAGAATGATTTTAAGAACAACAGGAAACTGCCCACGGAAGTGTATTATACTAGGTTGTTGTTTTATCCCTCctcaataaacagtattttgtaaCTTA

Function

GO: NA

KEGG:

id description
K20780 MDC1; mediator of DNA damage checkpoint protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137341 lncRNA downstream 2771 4308173 ~ 4311951 (-) True G109689
TU137298 lncRNA downstream 38336 4275329 ~ 4276386 (-) False AMCG00006429
TU137257 lncRNA downstream 46252 4266827 ~ 4268470 (-) True G109616
TU137280 lncRNA downstream 145610 4168050 ~ 4169112 (-) False AMCG00006415
TU137279 lncRNA downstream 147483 4166951 ~ 4167239 (-) True G109635
TU137350 lncRNA upstream 13469 4344387 ~ 4349812 (-) True G109692
TU137406 lncRNA upstream 183392 4514310 ~ 4515575 (-) True G109735
TU137408 lncRNA upstream 185019 4515937 ~ 4521369 (-) True G109736
TU137407 lncRNA upstream 185137 4516055 ~ 4521369 (-) False G109736
TU137436 lncRNA upstream 416052 4746970 ~ 4747234 (-) True G109761
AMCG00006429 mRNA downstream 37567 4270416 ~ 4277155 (-) True AMCG00006429
AMCG00006428 mRNA downstream 62999 4245185 ~ 4251723 (-) True AMCG00006428
AMCG00006427 mRNA downstream 72163 4233664 ~ 4242559 (-) True AMCG00006427
AMCG00006430 mRNA downstream 84197 4222078 ~ 4230525 (-) True AMCG00006430
AMCG00006426 mRNA downstream 96851 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006437 mRNA upstream 4754 4335672 ~ 4336182 (-) True AMCG00006437
AMCG00006434 mRNA upstream 36332 4367250 ~ 4368596 (-) True AMCG00006434
AMCG00006436 mRNA upstream 45763 4376681 ~ 4387311 (-) True AMCG00006436
AMCG00006440 mRNA upstream 90111 4421029 ~ 4430984 (-) True AMCG00006440
AMCG00006439 mRNA upstream 108882 4439800 ~ 4441434 (-) True AMCG00006439
TU137277 other downstream 149122 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 1984731 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2184467 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2290579 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2432885 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1683186 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2454395 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2747471 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4391470 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4456900 8787818 ~ 8794062 (-) True G110520

Expression Profile