RNA id: AMCG00006438


Basic Information

Item Value
RNA id AMCG00006438
length 2297
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00006438
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4441961 ~ 4450469 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCCTGCAGTTCTCAATGCGCCCAGCAGGTGGACACAGACGCCACGCATTCAGATTActgTGTGGCAGCAGCAGGAAGGGTCTGCAGCTCAAATCCCCGGGAACTCGCGCGTTGTGAAGTCAGATGATCCAAGTTACTCTTTGATGAAGGAAAAAGCGCAGAGGATCTTGGAGAGCAAGGAGGAGGACCGAGCACCGAAAAAGGACCGAAAAAAGGGTCTGCACGCCCGTGTGAAGAGCAGACCCCGCTGTGTTTGTATTGCAGGACCGGGCAGGACTCGCCGCTGCGGAGGTATTGCGTTTCCACAGTGCAGTTACGATGTCGGATTAACGCAAGAGTCGTGGTTTTCGATGCATTTAATCCAGTCGTGGCGTGGGGTGGTGCGGGAGCGCAGGTCTGACAGGGATTAGTCGGTTAACGTCCTGCTGAGTCGTACGGGACACAGTGCGGGTTTGGGGGGTTTCGCGTCCAGATCCAGGCGACGTCCCGGCTGTCCGGGGGCATCTGTGACCCCAGTGCCGCGCAGGGGCCGGGCAGGGCGGCTCAGGTatttggagaagaaaaacaggagGGGCAGCGACTTCAGCGAGTGTAAGATGACGGCGCTGCGCTTAAACCTCAGTCCCCTCAAAGAGCCGCTGGGCTTCATCCGGCTCCTGGAGTGGATCTTCTCCATTTTTGCCTTTGCTACCTGCGGAGGCTACAGTGGGAAAAACATAGTGTCTCTCTTCTGCAAGGATGGCGGAAATGAAACCTTGAACTTCAGTTTTTCCTACCCCTTCAAGCTGAGCCAGGTGTTGCTGGTGGCGAACAACTCTGCGTACTGTAACCACACTGTCCCGGAGACGCACCTGGTGGGCGACGCCTCCTCCTCGGCCGAGTTCTTTGTTGCCATCTCGGTTCTCGCGTTCCTCTACTCCATGGCTACCTTGGTCATATATCTGGGGTACATGCACATCTACAGGGACTCCAACTTTGGGCCGGTGGCTGACTTCCTGCTCACGTCCACCTTTGCCGTCCTCTGGCTCGTGTGCTCCTCGGCCTGGGCCCGCGGCCTGCACAACGTCAAGTACGCCACCAACTCCGAGGGCATCGCGGCCACCCTCTCGCTGTGCGGGGGGGACGCCTCCTGCCTCGTCACGGACCACGCTAGTATGCGGAGCCTGAATGTGTCTGTGGTGTTCGGCTTCCTCAACATGATCCTGTGGGCCGGCAATGCCTGGTTCCTGTACAAGGAGACGAGCTGGCACAAGCCCCCCGGGCCCAACGCTGCACAGCCCAGCGCGGTCCGGACGCCCCCCGGGGCCGGGATATAACCCCGAGGACACGGCACAGGCTCAGTGCGGCGCTGCAGCCTCCTCGGCCCAGAGCAGCCTGCGGAGCGGCTCTCGGCCACGCGGGCGGTGCGGACTGAGCCCGGCCGGTACCACTGCGCGGGCCCTGGAGGAAGGCTTTGCTGTTAATTCCTAGTACCCTGCCTGCCTGCGTCCCTTAACCATGGCAAACGAAAGGAAGCCCACGCTTCCAGTTGCAGAAGTCGCGTTTTGATGATGTGATGCGTTCGTTCCTGCGCTTTGCAGGAGCCCTTCTGTTCTTTAAGATATGAATCACTCTCTAGTTCACCTTCTCACTTTTCCCCTGATGAAGacagtgttattattgttgttattattttaattttgttgaaggcttttaaaaaaacaccaacacaagCATTGTCTTTCACGAGAATCGAAgttgactattattattattattattactacagtaTGCAtccttgtgtttgtttccaatGGCACCATACCTATacttgactttttatttttcgaATTCGTATCTTTAAAagtgcatgttttaaattgacTTAAACTGTcgtattttgtacattttgttagcGGTTTTGAGCTTGAAGAGACCTGAACACAATGACTAAAGCATAACAATCAGTCCTGCAGAGTGAAAGCCAACATCGTACACCATCGAATATAAGTAGGATTCATCGGTTGCTAATTTAAAGACTCGGAggtataaaaacatgtaatggaGACCCACCAAAAtgattcatttctgtttttatgatttGGTTCTGCCGTGTTTGTGTGGCTGGTGGCAGTAGCAGgtatgatttttgtatttagttgttTGAAGTCGCCAGCCTGTTTTTTACATTCCTgctttgtttgctgtttttacaCTTGAAATGTTTGGATCATTAATCCACTTCTTTATATTGATTACGCTATCTTGTTTCTgaactatttcaaaataataaaaataattcgaATTTGGCATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137306 lncRNA upstream 64584 4374148 ~ 4377377 (+) True G109655
TU137314 lncRNA upstream 106511 4334323 ~ 4335450 (+) True G109662
TU137312 lncRNA upstream 112683 4328869 ~ 4329278 (+) True G109660
TU137307 lncRNA upstream 125496 4314631 ~ 4316465 (+) True G109656
TU137227 lncRNA upstream 211477 4230234 ~ 4230484 (+) True G109597
TU137383 lncRNA downstream 17922 4468391 ~ 4473008 (+) True G109713
TU137391 lncRNA downstream 68448 4518917 ~ 4521249 (+) True G109721
TU137446 lncRNA downstream 472663 4923132 ~ 4924794 (+) True G109767
TU137458 lncRNA downstream 567620 5018089 ~ 5020403 (+) True G109779
TU137459 lncRNA downstream 570827 5021296 ~ 5022178 (+) True G109780
AMCG00006433 mRNA upstream 81765 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006432 mRNA upstream 175718 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006424 mRNA upstream 251875 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006423 mRNA upstream 256651 4179050 ~ 4185310 (+) True AMCG00006423
AMCG00006413 mRNA upstream 274009 4160202 ~ 4167952 (+) True AMCG00006413
AMCG00006446 mRNA downstream 38028 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006444 mRNA downstream 45937 4496406 ~ 4516083 (+) True AMCG00006444
AMCG00006445 mRNA downstream 74339 4524808 ~ 4525972 (+) False AMCG00006445
AMCG00006442 mRNA downstream 91643 4542112 ~ 4562075 (+) True AMCG00006442
AMCG00006443 mRNA downstream 120055 4570524 ~ 4571515 (+) True AMCG00006443
TU137203 other upstream 279988 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 286212 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 477965 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 578691 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 801300 3637743 ~ 3640661 (+) False AMCG00006387
TU137384 other downstream 26465 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 74337 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 574426 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 630412 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 630412 5080881 ~ 5098698 (+) False G109795

Expression Profile