RNA id: AMCG00006439


Basic Information

Item Value
RNA id AMCG00006439
length 975
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00006439
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4439800 ~ 4441434 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCCCCgctgtctgctgctgctgctgggcgCCGCGCTGCTCATCAGAGCCGAGGTGGGCgattttgaaaaatgcaagAAGTTTTTCTACGCCGGTGTCCCTCCGGCGGGACTGTCCGGCACCCCGATCTGCCAGAGCTACAGGAACCGCTACCGGTTCGCCTCCCTGTACGACCGGAGCCGACGCGCCCCGCTGTTCTCCGCATACATCTTCAATCCGGGCCCATCAAGAGCCCCAAGTAGAGCTTCTGAGGACAATTTACCCCAGTTCACCAGAGTGGGAATTGTTAACAGTGATGCTGATATCGAGCTGGTCACCACTGACTCTCCTGTCGGTCTCCTTTCCCAGCTGGTGGACCAGAATAATGACCCGGAGATGACGCCCTTCACGTCCTGTGACAACTTGGAGGAGATCAAGGTGAACCAATCCATCAAACGAGACTACAGCAACTCGGACTACACCAAGGGTCACCTGAACCCCGTGATGCACCAGTCTACTCTGGAAGACAAGACAGCCACCTTCACGCTCACCAACATCGTGCCCCAGACTGAGCACTCCAACAGGGAGTCCTGGAATGTCTACGAACACCTGGTCAACCACACCCTGAGCCGCTTCTGCACGGGAGATGCCTTCATCGTGACCGGGGTCCTTCCGTACCAGCAGGAGAAGTGGATcaaggacaacaacaacaacaaccgaGTGGCCATCCCTGAGTACATGTGGTCGGCCTACTGCTGTACCAAACACAAGGACAACAATGTCGCACTCAAAGGCAGCTTCCCCTTCCCGGCTTTTGCAGCACTGGGGCGGAACGAGGCTGCGGGCGACCTGGTCCCCGTCAATCCCCAATCATCTGAACTGAACAGGCATTACGCCGTCAATCTGATATCTCTGCAAGAGCTTCAAACCCAGCTGAGTCAAAGGTTTAACAGCGAGGTGCAGATATTTCACCGTGACTGCCAGCCAGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137350 lncRNA downstream 89988 4344387 ~ 4349812 (-) True G109692
TU137341 lncRNA downstream 127849 4308173 ~ 4311951 (-) True G109689
TU137298 lncRNA downstream 163414 4275329 ~ 4276386 (-) False AMCG00006429
TU137257 lncRNA downstream 171330 4266827 ~ 4268470 (-) True G109616
TU137280 lncRNA downstream 270688 4168050 ~ 4169112 (-) False AMCG00006415
TU137406 lncRNA upstream 72876 4514310 ~ 4515575 (-) True G109735
TU137408 lncRNA upstream 74503 4515937 ~ 4521369 (-) True G109736
TU137407 lncRNA upstream 74621 4516055 ~ 4521369 (-) False G109736
TU137436 lncRNA upstream 305536 4746970 ~ 4747234 (-) True G109761
TU137457 lncRNA upstream 529430 4970864 ~ 4971188 (-) True G109778
AMCG00006440 mRNA downstream 8816 4421029 ~ 4430984 (-) True AMCG00006440
AMCG00006436 mRNA downstream 52489 4376681 ~ 4387311 (-) True AMCG00006436
AMCG00006434 mRNA downstream 71204 4367250 ~ 4368596 (-) True AMCG00006434
AMCG00006437 mRNA downstream 103618 4335672 ~ 4336182 (-) True AMCG00006437
AMCG00006435 mRNA downstream 108882 4314722 ~ 4330918 (-) True AMCG00006435
AMCG00006441 mRNA upstream 13447 4454881 ~ 4476647 (-) True AMCG00006441
AMCG00006448 mRNA upstream 41800 4483234 ~ 4483880 (-) True AMCG00006448
AMCG00006447 mRNA upstream 42780 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006457 mRNA upstream 576361 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006456 mRNA upstream 622027 5063461 ~ 5067740 (-) True AMCG00006456
TU137277 other downstream 274200 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2109809 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2309545 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2415657 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2557963 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1572670 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2343879 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2636955 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4280954 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4346384 8787818 ~ 8794062 (-) True G110520

Expression Profile