RNA id: AMCG00006441


Basic Information

Item Value
RNA id AMCG00006441
length 1956
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00006441
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4454881 ~ 4476647 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGAGATGAGATTCAACCCTCTGAGCCTGAGACCAGGCAGCATGTGCCTTAAGATGCCGGTGCCGCCCCGAGACAACTGGCTGTCCAGCTCTGGTCATCAGGTTCACAAGCTGCACATCCCCAACACCGAGGAGGCCTGGGCGAACTCTTCTGTCGAGGCGCTGTCGATTCTGCGCAGATCCATTGTGGATGGAGATGTCCAGATGATGGGCCTAGAGTCTACTGCCACTCTTCCACTGGACAGCCCAGCTGGGACAGTCGTGCGGAGGTTCACGGTGGACACAGACCCAGATTCACCACTCGCCCCGGGATTTCCCAGCATAGTGACCACCCAGCCGGTATCTCGGGCCTTCAGTGTGTCCGCACTCTCCTCCAACCTCTTCCAGGTGGTTTGGCTTGGGAACCCTGTGCTGGATTGGCTGAACCCCCCAGAAACTGCACAGCTGCAGATATTTGCTGAAGACACAGCGGGAAACACCGACCTCAGGACTCTCACTGTGGGTTTCACAAGTCCAAGCAACGCACTACTATGTCTGGGGAATCAAGATGAAGTCATTTATCTCAAAGAGCACGAGTCCCTGTCATATCAGGTCAGCGTTTATTCCTCTGAACCGGGCAGTATCCAGTATTATCTCATGCCGAGTACAGTGTTTAAGATCAACAGCGCTGGCGTGATTCAGTCATTGAAGATGTTTGATTTTGAGACTGATCCACACagGACCTTTGGGATAATCCAGATCCCAGAAGAACAGCTGCCTGGCACCGTGGTGGCCACCGTGAGGGCCCAAGACCCCGACGACTTCAACTACGTGGGCTTCCTCCGATACAGCATCAACGACACGAAGTACTTTGCCATTGATCCATATTCGGGGGTCATCGTGGTGACTGTGCAGATGGACAGAGACAAGGCGCCGCTGCGGGACGAGCCGCTCATTTACATCAAAGTCTCCGTTCAGGACTTCTCCCCCAACATTTCCTCCAAGTCCAACAGCACAGTGATCGTGTTCAATGTCACAGACATCAATGACAAGCCCCCGGTCTGCTCTCCCGGCGCCTACAGTGTCATCATCCCCGAAACAATGGCAAACGGTTCCATTGTTGCGAAAGTGAACTGCACCGACGATGACGTTTACCCCATTAACaagaattttacattttgcctGTTATCTGGTTTGGGCAGCAATGACAGGTTTGCCATGCTGTCGCCCGTGTCTCCCGAGATTGTGATTGGACAAGTATCAGTTGTGGACAGAAACTTCCCGTTGGCGAATGTATTGTACTCCTTGGACACGCCCACGAAATGCACAAGCATCTTTTGGTTGAACCCGGGCAGTGGAAACCTACAGGTCACCACTCAGCCGGACTATGAAGTCAGCCAGCAGTGTGTTTTCACGGTGACCGCCAGGGAAATGACGCCAATTGGGACCCTGCTCTCGTGCCACACAACTGTGAGTATCAAAGCAGTTAGGGTGACCGTCAACATCCTCCCGGCCAATGTAGGGAAACCCAACTGCACGCCCATCGTCCAGCACCTGGCGGTCCCACTGAGCCAGCCCATCCAGACGGCTGTGCAGGGCTTCACACTCACCTGCCAAGACAGGGACTCGCCCCCCGCGGCCCTGCGTTATGTCATCTCCTCAGGGAATGTCAACAACCACTTCACGCTCTTGCCCCTCGAGGGCTCAGATACCACAGCGCTGATCCTCGGCATGCCCTTCGATTACTCCTCCGGCCTGGACCGGGTCTGGGAGTACAAACTCGTCATGCACATCATAGACGACAACCTGCTCGAGGCCCGGAGAGGACCCAAGGGGCTCGTCCAGACGGGCACGGTCACCGTCTATGTGCGAGTCTACCAGCCAGGCCTGACCATTCATACCACCACACAGGTCAGTCCAGCAGTACTGTACACAACCCGACACAACTTCATTCATAATGATGTCTTTTCATAA

Function

GO:

id name namespace
GO:0030903 notochord development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137350 lncRNA downstream 105069 4344387 ~ 4349812 (-) True G109692
TU137341 lncRNA downstream 142930 4308173 ~ 4311951 (-) True G109689
TU137298 lncRNA downstream 178495 4275329 ~ 4276386 (-) False AMCG00006429
TU137257 lncRNA downstream 186411 4266827 ~ 4268470 (-) True G109616
TU137280 lncRNA downstream 285769 4168050 ~ 4169112 (-) False AMCG00006415
TU137406 lncRNA upstream 37663 4514310 ~ 4515575 (-) True G109735
TU137408 lncRNA upstream 39290 4515937 ~ 4521369 (-) True G109736
TU137407 lncRNA upstream 39408 4516055 ~ 4521369 (-) False G109736
TU137436 lncRNA upstream 270323 4746970 ~ 4747234 (-) True G109761
TU137457 lncRNA upstream 494217 4970864 ~ 4971188 (-) True G109778
AMCG00006439 mRNA downstream 13447 4439800 ~ 4441434 (-) True AMCG00006439
AMCG00006440 mRNA downstream 23897 4421029 ~ 4430984 (-) True AMCG00006440
AMCG00006436 mRNA downstream 67570 4376681 ~ 4387311 (-) True AMCG00006436
AMCG00006434 mRNA downstream 86285 4367250 ~ 4368596 (-) True AMCG00006434
AMCG00006437 mRNA downstream 118699 4335672 ~ 4336182 (-) True AMCG00006437
AMCG00006448 mRNA upstream 6587 4483234 ~ 4483880 (-) True AMCG00006448
AMCG00006447 mRNA upstream 7567 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006457 mRNA upstream 541148 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006456 mRNA upstream 586814 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006463 mRNA upstream 634515 5111162 ~ 5114090 (-) True AMCG00006463
TU137277 other downstream 289281 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2124890 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2324626 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2430738 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2573044 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1537457 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2308666 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2601742 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4245741 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4311171 8787818 ~ 8794062 (-) True G110520

Expression Profile