RNA id: AMCG00006442


Basic Information

Item Value
RNA id AMCG00006442
length 3606
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00006442
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4542112 ~ 4562075 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCACCGCAGTGCAAGCAAGATCCTCCTGGCCCCAGAGAGCACTTCTGAGAACGGCATTTCCCCCATGAAAAGCCGAGCGCGATGCGTGGACCCCGACCCTGAACTCAGACCCTGGGAGACCCCCACGGTGGGAAGCATGGAGAAATCTCACATCGCTCTGAGGAGGCATTTCCTACGCAACCAGCATGCCGGCAAGACGGACTGGGAGACGGAGGACGGCAAGCCCCGCATCCAGAGAGCCGCGGTGAAGGACAAGTGCTGCCAGACGGACCACCACCACCATGGCTGCTGTGAGCCAGCTTACGCCGTGGAGCCCGGGGACCCGCCTCTACTGCAACAACAGCTCCCGACGTCCAAGTCCGGCATCCAGCAGATCATCGAGTGCTTCCGATCAGGAACCACCCAGCTGAAGCACATACTACTGAAGGAGGTGGACACCATCTTTGAATGCAAGCTGTGCCGCAGTCTGTTCAGAGGCCTGCCCAACCTCATCACCCACAAGGAGTTCTACTGCTTCCCCAGCCTGTCTCCGGCTGACGACTCCCTGGGTGCGAGTGACAAGCAGAGCCAAACCATCAAGGACCTCCTCGAAGCCATTTACCCCAGAAAGGACAAGCAGGAGTTTGTCGTGAGGCTCGAGCCGATCGCGTCCAACCAAAACGCGGTGTTCCAGTTCGTCTCGGGAGAGGATGAGCAGAGCCAGGTCCCGGAGAAGCCCGGCGCGCCCCACGTGCTGGAGGAAATCCCCGTCTCCGAGCGGCCGTCCCCGGGCGAAGCCCCCCAGAGCGAGGAGGCCGCCGAGCCGCTCCTGAAGGAGGACCTGACCGACGAGGAGGTGACAGCGGCTCCGGAGATGGAAAGCGAGGAGCCGTCCCTCCCGCTTACGGAGAGCTACAACAGCGACGGCTCAGACATGAACGTGGCCTGCCACCTGTGCGGGAAGGACTTCAACACCCGGCGCAGCCTGCGGCGCCACGTCCGCAAGGTGCACATGAAGAAGCGGGAGGCAAGGGTGAAGAACACAGAGACCAGGAGTGCCTCCCAAGGCCTGGGGACAATCGGCAAGGGCCGTCCCCGCAGCCTGCTCACGAGCTCGGGGAGGAGCTGCCCCATGTGCAACAAGTCGTTCGCCACCAGGGCCAACGTGCGGAGACACTTCGACGAGGTGCACCGGGGCCTGAAGAGAGACTACATCACGCCAGACATCGCCACCAAGCCGGGGCAGCTACTGTCCCTGGAGAGCAGCCCCTCGCCCCAGAAACCCGCCAACTCCCCGGGGCGCAGGCCGAAGGCGGAGTACAATGTGACAGCGTGCAAGTGCCTGCTGTGCAAGAGGAAGTACACGTCTCCGATCATGCTGAGGAGGCACCTGCGCATCGTCCACAAGATAACCATGCTGGAGAACGGGGCGGCGCCTGTTTCCGGCGGCGGCGGTGGTGCGGAGATCAAAGTGAAACTGGAAGCCTCGGAGATGGTGGATCCCCACGTCGAGTCGTCGCTAGGCAGCCGGTCTCCGCAGAGCGAGTCGAAGCGGGCGGTAGAGCGGAAAGGCGCGCACCCCGGCCCCAAGAGCAAAGCCAAGGTGAGCGACAGCCCCAAGTCCTCCAGTCCCAAAGCAGTGCCGAAAAAGAAGGGGAGAAAGCCCAAGCTCTCTGTGGGCTTCGACTTCAAGCGGCTCTACTGCAAGCTGTGCAAGCGGCAGTTCACCTCCAAGCAGAACCTGACCAAACACATAGACCTGCACACCGACGGCAACGACATCTACATCAAGTTCTACCGCTGCCCGCTGTGCAGCTACGAGACGCGCCGCAAGAGGGATGTCATGCGCCACATCTCTGTGGTGCACAAGAAGACCTCCAAGTACCTGGCCAAGGTCACGGCCAACCTGGAGAGCCGGGCTGTGAAGAAGCCCATGGAGGTGGTGCTGAGCAGCGTGGTGAAGAGGGGCCCCCAGAGGGAGGCGTCCGGCTCCCCGCCCGGCCGGAAGCCGCAGCAGGAAGCGGTGGAGGTCGGGACAGAGGTCAAGTTCACGAGAAGCTTCTCACTCCACACATGCAACAAATGCGGCAAGGCCTTCGCCAAAAAGACTTACCTGGAGCTGCACAAGAAAACGCACAAAGCGAGCGCGCAAAGCGAGCCTGAGGACAACAAAACCAAAGGTCGGAGCACACGATACCTCTGGAAGATGTACAGAACACTTGCACtggatttttaattgttaaaggatatatatatatatatttatatatatatatatatatataccgaatGGGAAACCACTAAAGATGCTGCAGAAGATTCTCCTTGACTGGAAGCCAGTTGGAAGGGTTGTGTGATATGAACCGATGGCGTTGATCAGCAGAGGATGTAACAACATAATGCACTGAGACACTCGTGAAGCAGGCGTTCAGGCCCGTGTGCAGAAGACTGAACACGCTGCACCTTCGAGTTCACTGTGGATTGTACAACGTCTCACCATGGAAGAGACTGGTTCACAACGAAGGTTTTATGATACCTAAAGCTAGggtatatagacacacacacactcacactcactgtgacacacacattgTACCATACATGATCTCGGCTGTGGGTTCAAGGAGCTTTTGGCAGCGCAGTGACTTACACAGGGTTGGGGAGACCAGGGTCCAATTCTTATAAAAGAAGTATACAGATGTCCAAACGTGTGTTGTGATCAATCGACTTATTTCTGATACACAACCGGGTGCCAGGGTCACACACAGCTCATATTGAACATATAGAAACTGGAAGAAACATAATAACTTTCGAGTTacattgacattattatttatgtatcagAAATATGTAGTTTGATCACAATATCTATTGTAAATCtgtatgctttattttcataataaacCTGTGTGTGCAGACAAGGAAAGAACTTTGTATTCAACGCTGTCAACATGGTCACCCGACTCAACACAACTGATGACGAAATTCACACTAATTGTTAGTGGATGGGGTGCCTTTTGTTGGAGGCTTGAGTGTGGTGAAATCGGTGGGAGTCGTCCCTCTGTAGATGTTGGGAAAACAAACCTTTCCTGGGTTCAGTTTGTCCTCTGGAGTTGAAATCCTCCGCAGCCCCCGGGTTCAGTTTTGAGACTGCAAATGTCATTGGATCAAAGTCTTGTACATTTCAATTAGTTCGAAGTGGAAATGAGTCGGCCCGTTTCTCAGTAGTGCTCGTGTAGTGAGAGGGTTGTTACTGTAGACTCACACTTTAAATCTCTTTAGCCACAGTGCGCTTGAGCCAGGTCTTCACAGTATTTCTCTCGCCAGACCACACAGAGATGTTTATTTAAGTGTACAAAGGAGAaggattatttttgtaaaagaaagtattattttgaaagaaatcgTTTTCATTTCGCAGGGTGTGAATGGCTATGTTTCTTCTAGTCAGGTAATGAAGTATGTGCGTTTTGTTTGCAAGGCGAGGGTTTCTGTTCtgttgattatatatatatatatcttcgaAGTGAAGAGATCTTGGACTTCGGTtcaggttgttttgtttatgatttgCCTACTGTGATTGTTGACAGGGTCTTCTGTGTAAAAGACGTTACTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137391 lncRNA upstream 20863 4518917 ~ 4521249 (+) True G109721
TU137383 lncRNA upstream 69104 4468391 ~ 4473008 (+) True G109713
TU137306 lncRNA upstream 164735 4374148 ~ 4377377 (+) True G109655
TU137314 lncRNA upstream 206662 4334323 ~ 4335450 (+) True G109662
TU137312 lncRNA upstream 212834 4328869 ~ 4329278 (+) True G109660
TU137446 lncRNA downstream 361057 4923132 ~ 4924794 (+) True G109767
TU137458 lncRNA downstream 456014 5018089 ~ 5020403 (+) True G109779
TU137459 lncRNA downstream 459221 5021296 ~ 5022178 (+) True G109780
TU137465 lncRNA downstream 482341 5044416 ~ 5044633 (+) True G109786
TU137473 lncRNA downstream 536921 5098996 ~ 5106948 (+) False AMCG00006460
AMCG00006445 mRNA upstream 16140 4524808 ~ 4525972 (+) False AMCG00006445
AMCG00006444 mRNA upstream 26029 4496406 ~ 4516083 (+) True AMCG00006444
AMCG00006446 mRNA upstream 45738 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006438 mRNA upstream 91643 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006433 mRNA upstream 181916 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006443 mRNA downstream 8449 4570524 ~ 4571515 (+) True AMCG00006443
AMCG00006450 mRNA downstream 53117 4615192 ~ 4632996 (+) True AMCG00006450
AMCG00006449 mRNA downstream 101427 4663502 ~ 4678336 (+) True AMCG00006449
AMCG00006451 mRNA downstream 137591 4699666 ~ 4706437 (+) True AMCG00006451
AMCG00006453 mRNA downstream 358943 4921018 ~ 4926780 (+) True AMCG00006453
TU137394 other upstream 14374 4524806 ~ 4527738 (+) True AMCG00006445
TU137384 other upstream 64542 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 380139 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 386363 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 578116 3963597 ~ 3963996 (+) True G109538
TU137460 other downstream 462820 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 518806 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 518806 5080881 ~ 5098698 (+) False G109795
TU137492 other downstream 565282 5127357 ~ 5128829 (+) False AMCG00006459
TU137762 other downstream 1416987 5979062 ~ 5982909 (+) True G110023

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU309380 False 888 TUCP 0.53 6 NC_053134.1 15062263 ~ 15088329 (-)