RNA id: AMCG00006443



Basic Information


Item Value
RNA id AMCG00006443
length 585
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00006443
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4570524 ~ 4571515 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCGGGGACAAGAGGCGCTCTGTTTCCTGCCACTGCTTCTTCCTGCTCACGGCCAAGTGCTGCTGGCTGTTGACCTCCATGCAGAAGACGGAGGCGCAGGAGCACGCCCACTCCATCCGCCTGGAAGGTGATATCATCCTCGGAGGACTGTTCCCCGTGCACTCCCGGGGCGAGCGTGGGATAGCGTGTGGGGAGTTAAAGAAGGAGAAGGGCATCCACCGACTGGAGGCCATGCTGTACGCCATTGACCAGATCAACAAGGACCCGGACCTCCTCCCCAATGTGACCCTGGGTGTCCGCATCCTGGACACCTGCTCCCGGGACACCTACGCCCTGGAGCAGTCGCTGACCTTCGTGCAGGCGCTGATCGAGAAGGACGCGTCTGACGTCAGGTGTGCCAATGGGGACCCGCCCATCTTTGCCAAACCCGACAAGATCATAGGAGTAATAGGGGCGGCCGCCAGTTCCGTGTCGATCATGGTTGCTAACATATTGAGACTTTTTAAGCCGAGGCTGCGGATTGCGGTGGCAGTCGTGTCCCGGGGACCGATTTTGTGGTACCTGCCACCTGCTGGACTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137391 lncRNA upstream 49275 4518917 ~ 4521249 (+) True G109721
TU137383 lncRNA upstream 97516 4468391 ~ 4473008 (+) True G109713
TU137306 lncRNA upstream 193147 4374148 ~ 4377377 (+) True G109655
TU137314 lncRNA upstream 235074 4334323 ~ 4335450 (+) True G109662
TU137312 lncRNA upstream 241246 4328869 ~ 4329278 (+) True G109660
TU137446 lncRNA downstream 351617 4923132 ~ 4924794 (+) True G109767
TU137458 lncRNA downstream 446574 5018089 ~ 5020403 (+) True G109779
TU137459 lncRNA downstream 449781 5021296 ~ 5022178 (+) True G109780
TU137465 lncRNA downstream 472901 5044416 ~ 5044633 (+) True G109786
TU137473 lncRNA downstream 527481 5098996 ~ 5106948 (+) False AMCG00006460
AMCG00006442 mRNA upstream 8449 4542112 ~ 4562075 (+) True AMCG00006442
AMCG00006445 mRNA upstream 44552 4524808 ~ 4525972 (+) False AMCG00006445
AMCG00006444 mRNA upstream 54441 4496406 ~ 4516083 (+) True AMCG00006444
AMCG00006446 mRNA upstream 74150 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006438 mRNA upstream 120055 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006450 mRNA downstream 43677 4615192 ~ 4632996 (+) True AMCG00006450
AMCG00006449 mRNA downstream 91987 4663502 ~ 4678336 (+) True AMCG00006449
AMCG00006451 mRNA downstream 128151 4699666 ~ 4706437 (+) True AMCG00006451
AMCG00006453 mRNA downstream 349503 4921018 ~ 4926780 (+) True AMCG00006453
AMCG00006454 mRNA downstream 355328 4926843 ~ 4930909 (+) True AMCG00006454
TU137394 other upstream 42786 4524806 ~ 4527738 (+) True AMCG00006445
TU137384 other upstream 92954 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 408551 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 414775 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 606528 3963597 ~ 3963996 (+) True G109538
TU137460 other downstream 453380 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 509366 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 509366 5080881 ~ 5098698 (+) False G109795
TU137492 other downstream 555842 5127357 ~ 5128829 (+) False AMCG00006459
TU137762 other downstream 1407547 5979062 ~ 5982909 (+) True G110023

Expression Profile