RNA id: AMCG00006444


Basic Information

Item Value
RNA id AMCG00006444
length 4020
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00006444
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4496406 ~ 4516083 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaagcaaaaaaaaaaaaagcagcaacaaGAAGGAAGAGCAATGGCGACACTGGATCGCAGGCTGCCCAGTCCGGATGCGTTCCTGTGCAAACCCTGGTCCGCCTTTATCGACGCAGCCAAATCACACTGCTCCGACAATGTGGAGGTGGAGGAGACGGGCAAAGAGGTTGGCACAGGCAGGGAGGTGATGAGACTCGGCAAGGAAGGTAAGTTTGGCGGCTGCAGACAGGGAGTCTGGTGCAATGCTGTGCTGTGGTGGCATGGGGTTATCAGGACCCCGGCACACTTCTGCAACTCTCTATACGTCCCCAGTTTGAGTTCACCTGCCTGGGCCAACTGTGACTGGATGCCACAGCTGGATCTGCATCTGTCCAGGGGGTGGGTCTTCGCTCTTCTGCACTGCCCCCCGTGTGAGCTGTGGTGTTAGCTGGGCTGGTGGCCCGAGGGAGTAACAGGTTGTCCCAAAGAAAAGTCTggtttcaaaaaacaaaacgagacAGATGCATAGACAGACGTGTAGGTGTAGGTGTACCGTAGTCTGAATTCGCTGTCGGCGTGTGAGTCTCGCCACTGCCTTATGTGAGAAACTTTGTCAGGTTTTAAAATCAGATGACGCCCATTGTTGGCGCGGTGGAGGTTTTAGTTTGCCCCTGCAGGACTGGCCCGGATTACACGGGTCTCCTACAGCAACAGCGCTGTTCTCTCTGGACACAGACGGAGACCCGGCGCCCCCACAGGACCGGGGAGCGGCCAGGACTCCGCACACCTCCCTGCCCGGGTGCTCGGTGGCCCGGAAGGAGAGAGACCCGTGGGGTGGCGCCGCCTCTGTGCCCGTCCGTCGCGGCTGCTGGACGACCCGGACCTTCACCGAAGGAGTCGTGTGTCTCGCCGCTTTCCCGCTTGAATGCCTGGACTCTGGACACAACGAGGGGTGGCTTCTGTGCTCAGTAACACCGGGCCTGGCCCAGACGGGTTTCCTCTGCCCTCTACACGCCGCAAGGCCTCTGTTTCGGTTCTGGGAATCCTGGATGTGGGTTTAGGAATATCTGCCGTGGACACAGGACTGCCCTCGATCGGCCTCAAAACCAGGATATTAAACGTGTGGCAGGATCACGTCAGTCCCACACGGGGGCCCCGGACTTCTGTCAAGTCTTCGGACGTGTTCGGCACCGATCTCTGAcgctttctgtttgtttgtgtgttgttctcTAGTCACAGTTTTCTCCTGTAAACGCTGCCATCTCTTTTGCAGGATGTGTTATTTCTCTCTGCTAATCCCACAGTCACTCCCAGATCCAGTTTGAAAAGGAGCTATATTAGTCAAGTTGTGGTTTAAAGACCATTTAAAGAGTCGCACTCCCTTGTAATCTCCCTATCAAGTTTCAGAGAACATTGTGTTCGAATGAAAGGCGTTGTGAGGCTATTTCAGTCGGTAATCttgagagggggagaaaaagcaCAACGCCAGCTTGTGTAAACCAGCTTATTCTGTGTACCTAAATGAGTCCCGATTGCTGCCAGCGGTGAGGTGTGCTAGGTGTGAACGCAGAGTCAGAGGGGGCTCCGGCAAAGGAACAATAGCAGAAATGAGGTCAGTGTGGGGGAGAGGTGTGCCCCCAAACACTCTCAGCTCTGCGGAAATGAAGAAACGTCAGGTATTAATCATACTGAATGACGTGTGCTTTCTTCCCTCTCTTCTGTTTCAGATATGCACTTATTTGGCCACTACCCTGCGCAGGATGAATTTTATCTCGTCGTATGCAATATCTGCAACCAGGCAGTGAAACCACAGGTGTTTCAGACGCACTGCGATCAAAGACACGGCTCCGTGGGTAAACCCTCCCCGGCGCCTGTTTCACCCCCGTGCAATTCCAGGACGCTGCTCGTCCCCATGAAGCCCAAAGTGTGCGTCGgcggcagcggcagcagcaaCGCAAAGCCATTCAGAACACCAAAAGACAATCTACATACCTCCATTAGTAAACCGCAGCACACAGCCTTCCCTTCGAAAGTGCCACGGGATAAGCCATGtgtccCAGTAGTGAGCCTTGAGAAGATGCCTCACCCGATGAGGGCAGACGGTGCCAATGTTAAAATGAaccccacctccaccaccaccacctccacctcctccgcctcctcatCCACCACATCTCCTGCCGCTTTGGTTAAACCTGCTTTGACATCAGCCGCACCCAGGCCCGTGCCTCCGTCGGACGAGCGGACCTTCAATGGCCGGGGCCTCATAACCCCCTCATCGTTAGACAAGAAACACCAAAATGGCAACAAAAGCAGTAATAAGCCTTACAAAAGACTTTCTGAACGGGAGTTTGACCCGAACAAGCACTGTGGAGTACTGGACCCAGAAACCAAGAAACCTTGCACAAGATCACTCACCTGCAAGACTCACTCCCTCACCTACCGGCGGGCAGTGCCGGGCAGGAGGAAGCAGTTCGACATCCTCCTGGCTGAGCACAAGACCCGGGCGcgggagaaggaggaggtgaGGGTCCGGGAGCCGCCCGGGCACAGCCACGCCGCGCTGGCACACGAGCCCCCGGGGGGAGCCGCCACCTCTGCCGCCACCCACCCCGGCCCCGACGGCAGGACTGCGTCGCCGGTGAAGTCTCGACTCGCCAGCTCCAACCCGGCCAGgcCGTCGCCGGGCAGCTCGGTCAGCGGGGCAGCAGCGTCGGAGCCGCCCGCCCCGGTTGGGGCAGGGGAACCGGGGGGCGGCCGGCTCTCGAGCGACGAAGGAGAGCCGGAGCTCCCTGAGGAGAGTGAGAGACTGGACTGCCACTACTCCGGACGCCACCCCAGAGCGCAGGGGTTTTGCACTTTTGGTAGCCGGTTGATGGGCAGAGGCTACTATGTGTTTGACCGGCGGTGGGACCGACTCCGCCTGGCACTGAACTCCATGGTGGAAAAGCACGTCAATTCCCAAATGTGGAAGAAGATCCCCCCCGCAGCAGAGAGCCCCCTGTCGTCCCCCGCAGCCCAGCTGGCAACCGCCCTCCCTGTCCTGCAGGCCCTGGGTGGCCCCGGCGCCGTCTACctgtcctcctcttcctccggCACCCCCCCCTACCCGGTGCCCCACTCCCTGCTATCCTCGGCCACCAGCATGGGGGGGGCGGACGGCAGCCCCGTGACGTCTCCCTACTCCGCGGCCTTCCCCCACGGCGGGGCAGCCTTCAACGTCCTGGACCCGCCCTTTAAGAGCGCCCCCACCCGGTCGCAGCCCCGGACCAAAACCAGCAAGACGCCGAGAGTGAAGGACCTGCCTCCGCGGGGAGGCAGCGCCGCGGCCAAGAAGAAGAAGCCCCcgcctcttcctcctcctcccgcccCCGCCCCACTGCAGTCCTCCTCTGCGTCGTCGTACGCCGGGGCTCACCGGAGGAACTGTGTCCTGGCGCCGGGCGCCCCGCTCAACTCTCGTGGCGGCAGCAACAACGGGACGACCCCACTTAGTGCCAAATCTGAGCCCTCAGGACGGGCTGTTCTGTCGGGCAGCTCGGCGGACCCTGTGAAGCGCGTGGGCACCGAGGGGGGCGGCGGCAGCACGGACCCGGCTCTGCTCATGCCCCCACTGGCGCACCTGGCCGGGGACCACGCCCTATCTGCGCACAACACCCTGTCCGGTGTGACGCTCGCCTACGGGAAGGCGGACGGGAAGAAACGCAAGAACGCCGGCTCCAGTGGCAAGCCCAGCAAAGTGACCAAAGTGACCGGCGTGAACAGTGTTCACCGCAAGAGCACCGCCAGCCTTCTCTCCGCCGTGCCGGGGTCCCCCAACAGCACCCTCTCCAGACAGCTGGAACGCAAGAAGGAATCTGAGAAAGAGTCAGCCCCCTCGTCTAAAAAGGATACGTGCCAGAGTCCATCACTGAAGGAGGGCCAGCGAGGGATCGGAGGAGCTGCCGGGAGTGGAGACGGCAATCTGGGGTTCGAGGCGGGGGGGGGGAACCCGAGGGAGGGTCCCCAGGGCCGAGCCAGACGGGCCCGGCAAGCGTGA

Function

GO: NA

KEGG:

id description
K11318 ATXN7, SCA7; ataxin-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137383 lncRNA upstream 23398 4468391 ~ 4473008 (+) True G109713
TU137306 lncRNA upstream 119029 4374148 ~ 4377377 (+) True G109655
TU137314 lncRNA upstream 160956 4334323 ~ 4335450 (+) True G109662
TU137312 lncRNA upstream 167128 4328869 ~ 4329278 (+) True G109660
TU137307 lncRNA upstream 179941 4314631 ~ 4316465 (+) True G109656
TU137391 lncRNA downstream 2834 4518917 ~ 4521249 (+) True G109721
TU137446 lncRNA downstream 407049 4923132 ~ 4924794 (+) True G109767
TU137458 lncRNA downstream 502006 5018089 ~ 5020403 (+) True G109779
TU137459 lncRNA downstream 505213 5021296 ~ 5022178 (+) True G109780
TU137465 lncRNA downstream 528333 5044416 ~ 5044633 (+) True G109786
AMCG00006446 mRNA upstream 32 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006438 mRNA upstream 45937 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006433 mRNA upstream 136210 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006432 mRNA upstream 230163 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006424 mRNA upstream 306320 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006445 mRNA downstream 8725 4524808 ~ 4525972 (+) False AMCG00006445
AMCG00006442 mRNA downstream 26029 4542112 ~ 4562075 (+) True AMCG00006442
AMCG00006443 mRNA downstream 54441 4570524 ~ 4571515 (+) True AMCG00006443
AMCG00006450 mRNA downstream 99109 4615192 ~ 4632996 (+) True AMCG00006450
AMCG00006449 mRNA downstream 147419 4663502 ~ 4678336 (+) True AMCG00006449
TU137384 other upstream 18836 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 334433 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 340657 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 532410 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 633136 3859273 ~ 3863270 (+) True AMCG00006393
TU137394 other downstream 8723 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 508812 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 564798 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 564798 5080881 ~ 5098698 (+) False G109795
TU137492 other downstream 611274 5127357 ~ 5128829 (+) False AMCG00006459

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU331877 True 344 lncRNA 0.49 1 CI01000080 2943228 ~ 2943571 (-)
striped catfish (Pangasianodon hypophthalmus) TU331877 False 574 lncRNA 0.35 3 NC_047612.1 10052832 ~ 10057175 (+)