RNA id: AMCG00006445


Basic Information

Item Value
RNA id AMCG00006445
length 403
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00006445
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4524806 ~ 4527738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGACACAGTGCCGCTGCCATGGCGACCCGGGACCCTCGCGCACTCGGCGGCATGGCGACCCCGCGCGAGCAGCACGCGGCCCGGTACCTGCGCGAGCACCGCATCCCCGCACTGCTGCACGCGCTGACCGGCGAGCTGCTCTTCCACCGGCCCGAGCGGCCCCGTGAGTTTCTGGTTTCGAAGCTGGAGATGCTCAAGTCCACCCACACCCACCCCTGCCTTTTCAGTGACTCCAACCTGGACGCTGTGTTTGGGATACTGGACACGACAAAGCAGGGGTACATCAGTCTAGCACAATATAAAGAAGCCCTGAACACTCTGGGAGTAAAGGATTTTGACGAGTCTCCGGAAGGAGCCGAATTTAACAAGATATCTCTGGACACGTTTAAGAAAGAGGCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137391 lncRNA upstream 3559 4518917 ~ 4521249 (+) True G109721
TU137383 lncRNA upstream 51800 4468391 ~ 4473008 (+) True G109713
TU137306 lncRNA upstream 147431 4374148 ~ 4377377 (+) True G109655
TU137314 lncRNA upstream 189358 4334323 ~ 4335450 (+) True G109662
TU137312 lncRNA upstream 195530 4328869 ~ 4329278 (+) True G109660
TU137446 lncRNA downstream 397160 4923132 ~ 4924794 (+) True G109767
TU137458 lncRNA downstream 492117 5018089 ~ 5020403 (+) True G109779
TU137459 lncRNA downstream 495324 5021296 ~ 5022178 (+) True G109780
TU137465 lncRNA downstream 518444 5044416 ~ 5044633 (+) True G109786
TU137473 lncRNA downstream 573024 5098996 ~ 5106948 (+) False AMCG00006460
AMCG00006444 mRNA upstream 8725 4496406 ~ 4516083 (+) True AMCG00006444
AMCG00006446 mRNA upstream 28434 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006438 mRNA upstream 74339 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006433 mRNA upstream 164612 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006432 mRNA upstream 258565 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006442 mRNA downstream 16140 4542112 ~ 4562075 (+) True AMCG00006442
AMCG00006443 mRNA downstream 44552 4570524 ~ 4571515 (+) True AMCG00006443
AMCG00006450 mRNA downstream 89220 4615192 ~ 4632996 (+) True AMCG00006450
AMCG00006449 mRNA downstream 137530 4663502 ~ 4678336 (+) True AMCG00006449
AMCG00006451 mRNA downstream 173694 4699666 ~ 4706437 (+) True AMCG00006451
TU137384 other upstream 47238 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 362835 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 369059 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 560812 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 661538 3859273 ~ 3863270 (+) True AMCG00006393
TU137460 other downstream 498923 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 554909 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 554909 5080881 ~ 5098698 (+) False G109795
TU137492 other downstream 601385 5127357 ~ 5128829 (+) False AMCG00006459
TU137762 other downstream 1453090 5979062 ~ 5982909 (+) True G110023

Expression Profile