RNA id: AMCG00006456


Basic Information

Item Value
RNA id AMCG00006456
length 1492
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00006456
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5063461 ~ 5067740 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGACTTCGCTGATTCATGTGGACCTGTGTGCCATGAATGCCGTTCACCCCGTGCTCTTCGTTGGCTGGCTAGCTTGTGTGCACTTCATGTGGGATGCCTCATGCCAGCAGCTCAAGCCTGCCAGGGCCCCTCTTCTCCAGCACAAGCCCTTCATTGTGGTGTGGAACGCTCCCACAGAGTCCTGCCGGCTCCGCTTCAAGGTGGACCTGGACCTCAGCATATTTGACATCGTCACCAACCTGAACGAGACCCTGAGTGGACCCAACGTCACCATATTCTACCACACTCACTTAGGGTACTACCCCTTCTACTCAGAGGAGGGGAGGCCGGTCAACGGTGGTCTCCCGCAGAACCAGAGCCTCACCAAGCACCTGAACAAGGCGAGGAATGACATCGACCGCTTCATACCTTTCAAGGACTTCAGGGGACTGGGGGTCATTGACTGGGAGAACTGGAGACCCCAGTGGGTCAGGAACTGGGGTGCCAAAGACGTGTACAGGAACAAATCCAAGGAGCTGATCAGGAGACTTCACCCCCAGTGGCCCGACAGCAAGGTGGAGCAGGAGGCCAAGGAGGAGTTCGAGAAGGCTGGTCTGACCTTCATGAACACAACCCTGGCGCTGGCGGAGAGCAGGAGACCCACTGGCCTTTGGGGTTTCTACCTTTACCCCGAGTGCTACAACTATGGCTACAAGCAGTACCCACAGAAGTACACGGGCGAGTGTCCCAACATTGAGCATGTGCGCAACGACCACTTGATGTGGCTGTGGAAGGAGAGCACCGCGCTGTACCCGTCCATTTACCTCGACTACGAGCTCCAGTCCTCACCCAACACGGTGAAGTTCGTGCACTATCGGGTGAAGGAAGCCATGAGGATCGCATCCATCGCCCGCAGTGACTTCATGCTGCCAGTCTTCGTTTACTCCAGGCCGTTTTACGCTTACACCTTTCAAGTCTTATCGGAGATTGACCTGATCCACACCATCGGAGAGAGTGCAGCACTGGGGGCAGCCGGGGTGGTCCTATGGGGGTCTTCTGTGTATGCAAGATCCCAGCGGTACATCGACGGGCCACTGGGGCACTATGTCATCAATGTGACGGCGGCGGCAAAGCTGTGCAGCAAAGCCCTGTGCAAGAAGAATGGCAAGTGCATCCGCAAGAGCCTGGACAATGGGGCCTACCTGCACCTCAACCCCCGCTTCTTCAGGATCAAGAGCGACTCCGGCAGCCGGGGCACCAGGTTCTTCGTCAGCGGACACCTGACCAGTGAGGACATGTGGGCCATGAAGACCAAGTTCACCTGCCAGTGCTACCAGGGCTGGGCGGGGATTTTCTGCGAGGTGCCCGAGTCCTCGAGGGTCGTAGTCTGCCGTAAGCAACAGATCCTGAGAGACGTGCTAGAGGGactttctttgcatttttcctGCCTTTCTGTGATTATCTTTCTCTGCTTATGCCTCGTCGTAGTGGACTTGAAGGCAACCAACATG

Function

GO:

id name namespace
GO:0006952 defense response biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004415 hyalurononglucosaminidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137461 lncRNA downstream 42786 5020037 ~ 5020675 (-) True G109782
TU137457 lncRNA downstream 92273 4970864 ~ 4971188 (-) True G109778
TU137436 lncRNA downstream 316227 4746970 ~ 4747234 (-) True G109761
TU137408 lncRNA downstream 542092 4515937 ~ 4521369 (-) True G109736
TU137407 lncRNA downstream 542092 4516055 ~ 4521369 (-) False G109736
TU137499 lncRNA upstream 68778 5136518 ~ 5136744 (-) True G109815
TU137574 lncRNA upstream 277943 5345683 ~ 5347227 (-) True G109875
TU137582 lncRNA upstream 341600 5409340 ~ 5409571 (-) True G109878
TU137623 lncRNA upstream 367197 5434937 ~ 5435764 (-) True G109916
TU137664 lncRNA upstream 509730 5577470 ~ 5580727 (-) False AMCG00006476
AMCG00006457 mRNA downstream 12270 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006447 mRNA downstream 570931 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006448 mRNA downstream 579581 4483234 ~ 4483880 (-) True AMCG00006448
AMCG00006441 mRNA downstream 586814 4454881 ~ 4476647 (-) True AMCG00006441
AMCG00006439 mRNA downstream 622027 4439800 ~ 4441434 (-) True AMCG00006439
AMCG00006463 mRNA upstream 43422 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006462 mRNA upstream 47976 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006470 mRNA upstream 282464 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006471 mRNA upstream 368803 5436543 ~ 5483801 (-) True AMCG00006471
AMCG00006473 mRNA upstream 442849 5510589 ~ 5513330 (-) True AMCG00006473
TU137277 other downstream 897861 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2733470 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2933206 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3039318 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3181624 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 946364 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1717573 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2010649 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3654648 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3720078 8787818 ~ 8794062 (-) True G110520

Expression Profile