RNA id: AMCG00006457


Basic Information

Item Value
RNA id AMCG00006457
length 5577
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00006457
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5017795 ~ 5051191 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTAGAACGATGAGAGGAAGGACCCCCAACGCCGCATCTCTCCATGCTACTCCTCTTGCTTGTGCTCTGACCTGCTCCTGGGCGCTGGTCCTCATCAACTCCGCCCTGGCCCTGAAACCTGCCAAACTACCCCTAATAGGAAGGAAACCTTTCATCGCCGCCTGGAACGCCCCTCTGGACCTCTGCACCATGAAGTACAACGTCAGCGCCGACCTCAGCATGTTCCATATCGATGGCAGCCCGAGAGCGACGCGAACTGGGCAGAACGTGACCATATTTTACGCCAACCGTCTGGGACACTACCCCTTCTACACGGAGCAGGGCGCGCCGGTGAACGGGGGTCTCCCGCAGAACTGCAGCTTGGACTCGCACCTGCAGAAGGCCGATAGGGACATCCGCTTCTACATCCCCTCGGAGAACTTTAGTGGCCTGGCCATCATAGACTGGGAGTACTGGAGGCCGCAGTGGACGCGTAACTGGCACAAGAAGGACATCTATCGGAGGAAGTCCCGGGAGCTGATCTCCAGCGCGTATGTCAACGTCTCCGCTGAGCAGGTGGAGGACCTGGCGAGAGACAGATTCGAGAGGAGCGCCAGGGCTTTCATGAAGAGGACCGTCCAGCTCGGGGTACAGAGTAGACCCAATGGACTGTGGGGCTACTACCTGTACCCCGACTGCCACAACTACAACCTCCACGAGCACAACTACTCCGGCTCCTGCCCGGTGTTGGAGAGCCTGAGGAATGATGAGCTCTTCTGGCTGTGGAACAGCAGCACGGCCCTGTTCCCCTCCGTGGCCATAAAGAAGTCCCATGCGGACAGCATCAGCAACCTGCACTTCTCCCAGTTCCGGGTCCTCGAGTCACTCCGGATCGCGTCCATGACATCCTTGGATTTCGACTTGCCCACCTTTGTCTACACTCGGCTTGGGTACCGGGATGAAGCGCTGTCGTTTCTCTCAATGAAAGACCTGATTCACACCATTGGAGAGAGCGCTGCGCTGGGAGCCGCAGGGTTCGTAATCTGGGGAGACATGAACCTCACCTCCTCCAGGCACAACTGCTCCAAGGTGAAGTCGTTCCTGAGCCACACACTGGGCCGCTACATCACCAACGTGACGCGGGCTGCCGAGGTGTGCAGCGACTTCCTGTGCCAGAGCAACGGCCGCTGTGTGCGGAGGGACTGGCAGGCGCCGCACTACCTGCACCTGAGCGCCGACAGCTACCGCATCCAGTCCTCCGAGGAGGGGGGGGCGCTCAAGGTCACCGGGTGGCACTCAGAGCAAGAGCTGGCCGAACTGCAGGCCAGGTTCACCTGCCACTGCTACCAGGGGTACGAAGGGGACAAATGCGACAGCCCTGAGGAGACACAGGCGCCCGACAGCACTGCAGGCCGACCTCTGACTCCCCTCACACTggtcctgttgttgttgTTCCATAGAAGAAGAAAGATGGAACTGTTCACCCGTATCAGAAAGAAGACCCCACCTCTATCCGCGCTCCTCTTTGTCACTCTGCTAGAGAACCTGTACTTCTCTCATGGTCTGCCTCCGACAGCCAGCCCTCTGTTTGACGGGCGTCCGTTTGTGGTCGTGTGGAACGCACCGACCCCTGCTTGTAAAGCAAACAAGATCACCTTAGATTTGGCAGCGTTCGCAGCTGTGACCACCCCAGGGGACGATCCAGGCCAGGACCTCACCCTTTTCTATCATAACAGACTGGGGCTATACCCATATGTCAATGAGGAAACCAAGCAAGAATTCTATGGGGGGATCCCTCAACAGGCCAACATGGCAGCTCACTTGAAACATGCCCAGGAGGACACAGCCCACTACATTCCCTCCGAAACGGCCACTGGTTTAGCTGTCATCGACTGGGAGTCGTGGAGACCACTGTGGCTCAGGAACTGGGGCTCGAAACAGATATATAAGACCCTGTCTGTCGCTTACGCCAAGAAACTGGACCCTTCCCTGTCAGAGCAGCAGGCGACAGAGGTAGCGAAGGCACAGTTTCAAGTGGCCGCGAAGGAGTTCATGGCGAAAACCCTGGAGCAGTGCAGCACACAGCGCCCCAAGCAGCTCTGGGGTTACTACCTGTTCCCCAACTGCTACAATTACGGCTACAATGACGCCAGCAAGGTGTACACAGGCGAATGCTCGGATCTGGTGAAAAGTCGGAATGACGAGTTGCTGTGGCTGTGGCAGGGCAGCAGCGCTCTCTACCCCTCCGTGTACCTGCCTGCCGCTCTCAAGGACACCGACAAGGCAGCCCTGTACGTCCGCAATCGGGTGCAGGAGGCCATGCGAGTGGCGGCGCTACCCAAACGCAGCTCCACCGCCCCCATTTACGCGTTCAATCGGCCGGTCTTCACCGACAAGAACAAAGAGTTTCTGGAAAAGATCGATCTGGTTCACTCTATAGGAGAGAGCGCGGCAGTGGGGGCCTCGGGGGCCATTTTATGGGGGGCGAGTGCAGACTTTAATGACAAGAACACGCTGAGCCCCTACATCGCCAATGTTAGTGCAGCCGCCAAGCTCTGCAGCAGCATGCTCTGTCAGGACAACGGAAGATGTGTCAGGAAGAACTACGACAGCAGCGATTATCTGCAGCTCAATCCTGCCCACTTCCAAGTACAAAGGGGGCCACATGGGAAGTATCTTGCCACTGGATTGGCAAGCGCTGATGACCTGAGTCATTTTGCAAACAAATTCACTTGTCAGTGCTTTGAAGGAAAGAGCTGTCAGGCACGATTGCCAGACAACATTCCTCGAACTGAGATTACTCTGCTCAGCGCATCCTGCTGCATAACATTTACGACAATAACGAGTTTGATCAGCCAGAGAATTGTTTGCTTGCATCATCATCCCAGCACCAAAGCTCATCCTCTTTACAAAAATACCCCCTTTGCTTTTATATTCAATGCACCATCAGATCCCTGTTCAGAAAAGCATGACATTTCGTTAGACCTGAGTCAGTTTTCTGCCGTGAGTTCTCCTGCGGCCAGTGCTATAGACCAGCCTCTCACTCTGTTCTATAACAACAGGCTGGGTCTTTACCCCTTCGTAAATGAACAGACCGCCGAGCTCCACAATGGAGGCATCCCACAGGATGGCAACCTGCAGAGACACCTAGAACAGGCAGCGGAAGACATCAGCTTCCACATCTCCTCGGAGAAGGCCAATGGCTTGGCAGTGATCGACTGGGAAGATTGGAGACCAGTCTGGATGAGGAACTGGGCGAGGAAGATCATTTACCAGAAGCTTTCCTTGGATAGTGGCGAGTTTGAAAGAGCTGCGAGAGAATTCATGAGGGAGACGTTGAAACTGGGGAAGACGTTGAGGCCCAATCAGCGATGGGGCTTCTACTTGTTCCCAAACTGCTACAACCACAGGCACATACTCAACACGAACTACACGGGCCAATGCCCAGAGGCAGAGAGGGCACGCAATGATGGTCTCCACTGGCTCTGGGAAGAAAGCACAGCTCTGTATCCGTCCATCTATTTCCTGGAAGACTTGAAGGATTCGTGGAAGGCCGCACTGTTTGTTCGCCACCGTGTTCTTGAGGCCATGAGAGTGGCTCAGCGGCCAAGACGCTCTGAGCCCATCCCCGTGTACGTGTACAACCGCCCGGTCATCGTTGGTCACACCCAGCAATTCCTGAGCCAGATGGATCTTGTGCATGCGGTTGGGGAGAGCGCTGCTCTGGGCGCTGCAGGAATGGTGTTTTGGGGAGCTTCTGCTGACTTCAGTGATGAGGAGAAATGTTCAGCCATGGGTAAATATTTAGAAGAGATCCTGAATCCTTATCTGGCCAATGTCTCTGCTGCAACCCAGCTGTGCAGCTCCCAGCTGTGTGCGGACAAGGGCAGATGTGTCAGAAAGGACCCGCACTCCAGCCGCTACCTGCACTTAAACCCCACTAACTTCAACATGCAACAAAATGCGGACGGGAAACATGTTGCTGTTGGTTCACCATCTCACACTCCTCGGAGTTCAACCTGCTGCCTTATTCTCTTAACCCTGTTCAACGCTTGCCATGCTCTGCTCCACACCGCACCCCCGTTAGGAGTCAACTTACCTTTCCAATTCATGTGGAACGCACCCACAGAACTGTGCCGCAGCAGATTTGGCCTCCGCCTGCCCCTGGAGCACTTCCAGTTCGTGAGCAGCACACTGAAGGCTTCCACCAACCAGAGCATCACCCTGTTCTACATCGACAGATTCGGCGTCTTCCCCTACATGGACAAAGACACAGGGAAGTCCTACAACGGAGGCATCCCTCAGCTGATTGACTTCAAAGAGCATCTGAGACTGGCCAAGTTGAACATCAGCTTCTACATCCCCTCTGACCATCCGGGCTTCACTGTCCTTGACTTCGAAGAGTGGAGGCCGCAGTGGGCAAGGAACTGGGGCAGCAAGAGCATCTACAAGAGGCACTCCATCGACCTGGTGATCCAGAGCGACCTCAGCTTGAACTTGGTCAAGGCGGAGGAGAAAGCCAAGAAAGACTTCGAGGAGGCAGCCAAGGCTTACTTCAGGGAATCTCTGAAGCTCGGCAAGTCACTGAAGCCCAATCGCCTGTGGGGCTACTACCTGTTCCCGGACTGCTACAACTATGAGTACAGAGACGTCCTGTGGAACTACACAGGAAGGTGCCCCAAGATCGAGCAGGACAGGAACAACCAGCTTCTGTGGCTGTGGCAGGAGTCGGAGGCACTGTACCCCTCGATATATCTGGAGTTGATACTGAAGGACTCCCCGAAAGCTACCATGTATGTCCGTCACCGCATCCAAGAATCCATGAGGGTCTCCATGCTCCCCAATAAAAATTACTCTATCCCCATCTACGCTTATATCCGTCCCGTGTACAAAGACACCCTTTCAGTTTACTTGTCTGAGTATGACCTGGTGAACACCATCGGAGAAGCCGCCGCCTTGGGCTCCGCAGGTGCGATCGCCTGGGGGGACCTGAACGTGTCAGTGAGTGCGTTCTCCTGCAGCGCTGCGAAACAATACCTAGTCAACACCATGAACCCGTACATGCTCAACGTGTCCACGGCCGCCCGGTTCTGCAGCACGGCCCTGTGTGGGGACAATGGGAGATGCTTGAGGAAGAACTGGAACTCCAGTGATTACCTGCACCTGGATCCCAGCAGACACAGCATCGAGAGATACAACGATGGGTCGCTCTCGGTGAAGGGCCAGTTGTCCCAGGAGGATATCGACTGGTTTGAAGACCGGTTCACCTGCATGTGTTACACGGAGGAGCCCTGCGAGTCGACACTGGTTTTGAACACCATTCCAGAGAGACTCTACAACCGAGGTGTTGTCTTTGCACCATCAGTAGAGATTCTTACTTTCCTTCTCTGTGTGGTCCTCCTTGATGGACTGGAGATTTTGAAGCAGTTTCCTTCAGATATCATGCCCCACAAGTTAAATATATCCACATCATCAAGGAACCAGCACAACGCTCAACAATGGAACAGAGTACTTGCAGAGATCACTGTAAGAATGATGTCCGTTCCTTTTTTTCAAGAGAATTGTTATCTGCCAGAGGTTGCCCTAAAGCACTAA

Function

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137457 lncRNA downstream 46607 4970864 ~ 4971188 (-) True G109778
TU137436 lncRNA downstream 270561 4746970 ~ 4747234 (-) True G109761
TU137408 lncRNA downstream 496426 4515937 ~ 4521369 (-) True G109736
TU137407 lncRNA downstream 496426 4516055 ~ 4521369 (-) False G109736
TU137406 lncRNA downstream 502220 4514310 ~ 4515575 (-) True G109735
TU137499 lncRNA upstream 85327 5136518 ~ 5136744 (-) True G109815
TU137574 lncRNA upstream 294492 5345683 ~ 5347227 (-) True G109875
TU137582 lncRNA upstream 358149 5409340 ~ 5409571 (-) True G109878
TU137623 lncRNA upstream 383746 5434937 ~ 5435764 (-) True G109916
TU137664 lncRNA upstream 526279 5577470 ~ 5580727 (-) False AMCG00006476
AMCG00006447 mRNA downstream 525265 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006448 mRNA downstream 533915 4483234 ~ 4483880 (-) True AMCG00006448
AMCG00006441 mRNA downstream 541148 4454881 ~ 4476647 (-) True AMCG00006441
AMCG00006439 mRNA downstream 576361 4439800 ~ 4441434 (-) True AMCG00006439
AMCG00006440 mRNA downstream 586811 4421029 ~ 4430984 (-) True AMCG00006440
AMCG00006456 mRNA upstream 12270 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006463 mRNA upstream 59971 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006462 mRNA upstream 64525 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006470 mRNA upstream 299013 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006471 mRNA upstream 385352 5436543 ~ 5483801 (-) True AMCG00006471
TU137277 other downstream 852195 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2687804 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2887540 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2993652 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3135958 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 962913 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1734122 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2027198 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3671197 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3736627 8787818 ~ 8794062 (-) True G110520

Expression Profile