RNA id: AMCG00006458


Basic Information

Item Value
RNA id AMCG00006458
length 3201
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00006458
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5139542 ~ 5149792 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacTGTGATTCACTAATCTCACTAAGGGCTCTTGTCTCCTCGGCCGCTCAGAAGACTAAAACAATAAAGATTTATTGTTAACTCGGAATGGGCCTGATTTTTAGTTAATGGGTAAAGGTGACAGGTTAGAGAAAGATTAATCAGGGCTGAGTATTTAGTGGGGTTAGGAGGCGAGGAGGAACAGTAGCCGGACTCAGGTCAGAGAGATGGGTTTCCTCGCCAGGCTGTGGGCTGTGCGCCGATTCCTCGTGGTTGTCCTCACTCCACTCCTGCTGCTGCCTCTGCCACTGCTGGTCAGGACTAAAGTGGCAGAATGCGCTTTCGTCCTGTTCCTCATGGCCGTGTACTGGCTGACAGAAGCAATGCCTCTCGCAGTGACGGCTCTCCTTCCCGCCCTCCTGTTTCCGCTGTTCGGCATTTTGATGTCATCTCAGGTTGCATCTGCCTATTTCAAGGACTTCCACCTCTTGCTGATGGGGGTCGTCTGCTTGGCCACATCTATCGAGAAGTGTAACCTGCACAAGCGCATTGCGTTGAAGTTGGTCTTGCTGGTTGGAGTGAACCCTGGCTGGCTGATGCTGGGGTTCATGGTCAGCACGGCGTTCCTCTCCATGTGGCTCAGCAACACGACCACAGCTGCCATGGTGATGCCCATTGTGGAGGCTGTCATTCAGCAGATCCTGCACGCCGAGGCGGAGGTCAGCGCTGTGAGGATGACGCAGATCAATGGAATCGTAAACCAAGGCCTGCAGCTCAATGATGAAGAGAAAGCTGAGAAAAGCAAGGAAATATTAagTAACGAAGTTGGACATAAGGTGGTGGTGACTGTAGACCACGAATACGCCTCTCCGCAGACCGCAGTACCCATTCCCCAAACTGAAGGGAAATACGGCAGCCGCAAGGACCACATGCTGTGCAAGGGCTTGTCGCTGTGTATCGCCTACTCGTCCACCATCGGAGGTCTGTCCACCATTACTGGCACGTTTTACCCAGACTGCCAGTGTATTAACTTCGGATCCTGGTTTGTTTTGTGCTTCCCGATCACCGTTCTCATTCTGCTGTTCTCCTGGCTCTGGCTGCACTGGGTCTTCTTAGGATCAGACTTCAAGGCGTTGCTGAGCTGCAGGAAAGAGAaatcagaaagagagagggccTCGGCCGAAATCATTGCTAACGAATACAAGAACCTGGGGCCCCTGAGCTACCAGGAGATCGTCACGCTGACCATTTTCATCTTCATGACGCTGCTCTGGTTCACGAGAGATCCCGGCTTCATACCTGGCTGGTCGTCTCTGTTTAAGCAataTAAGGGTTATGCCACAGACTCGTCAGTCGCCCTACTTCTCGGACTTCTCTTCTTCATCATCCCAGCGAATAAGCCAGACAGATATTCCTCAGACGTGTCCTCGTCCTCCACGCTGATCACGTGGAAAGAGTTCCAGTCCTGCATGCCCTGGGAGATCTGCCTGCTTGTGGGGGGAGGTTTTGCGCTGGCCGAGGGCACAAAGGAGTCGGGACTGTCTGTGTGGGTCGGCCAGCAGCTGACTCCGCTTGGCTCCCTTCCCGTGTTCGTGACCGTCATGCTGTCCTGTTTGATTGTGACCTCGGTCACCGAAGTGGCCAGCAACCCAGCCACCATTACAATCTTCTTTCCTATTCTGGCCCCTCTGGCCGAAGCCATCAACATAAACCCACTGTACATCTTGATACCCACGACACTGTGCACTTCTTTTGCCTTCCTACTGCCGGCAGCAAACCCGCCCAACGCCATAGTCTTCACCTACGGACACCTGAATGTCATTGATATGGTGAAAGCCGGCCTGGGAGTCAACGTCATCGGGGTTCTCGTGGTCATGCTGGCCATCTCCACGTGGGGAGAGCCTCTGTTTCACCTGAGCCAGTACCCCACATGGGCCGCCCCCACGGCCTCCTCCAACATCACCGGCCTTTGAGCGGCGAGCCCATCGCCTGAGCGCACAGACCGGCAACGTCCAGCTTCACCGGCTGCTGTCCTGACTTTGAAAAGCCAACAGCCGACACCTCAGccggaaaacaaaatcaaattctGCTGGCATTTCTTTCCTTGAGGGAACAACGGAAGATAAAGAAATACCTTTGAGCCTTGCACCATCAGCCACTCCTCTGTAAAAGCACGGGTGCGAACGCAGTTTGATTGCTATACAGGCAGCAGTGAAGTACTGAGGACTCTGAACGTGTGACCTGAGAGTTACAGGTTTAAATGACAGGTGGGGGACTCAGAGGACAGCCTCAGAGATAAGTCCATTGAGGGAAAAACACCcggcacaaaacagagcagaaacAAACTTCTCCGTCTGTGGTTATTTCGCCACGCGTATCCCTCTGGGCTGGTATTTGACCCACTGATGTAGAAAAAATGTCTTCTCTTCCAATAATTCTTTTACAATTTGGCGGAACTGAGATTGGCTGAAGACAAGACAGTAGAATTAGTCCCCCCCCTCCTTAAAATCTGTGTTTAACAGTAAATGATACGCACACGTCGGGCAGGATTTCGTATTGTAGCAGCGTAAATGTGTGGTTTTGGGACGTTATTTTGAACGTGAGAACAGACTGTAACAGAATTAGGTGAATTATACAGAGCTGTCATCATTTGtcaattataatgtttttggtCTTCATCGGGAATCAGATTAAAAAGTTGTCTCATAAACGGTTTCTAAATTCAACGTGTCAGCTTTGAACGAGTCTTAAATCTTCCTCATGTGTGTTGCATATTATTTCAGCAGGCACCAGAGTGTGACATAGCATTGCTGATGGTGCCTGTTGAGCAATGGCAGTTTACTAAGGGAATGTATCACTCCACGTTAATAAACTGTACCGTGTCCCTTCAGATTTACTCCCGAGACTCGTCCAGCTTTTAAACAATTGCCACAGTACACACGCTATCTGAAGAGTCCatgcacatacaaacatactAGCACTAAAGCATTTTAATAGCTTATGTGCCATTTGTCTgaactgaaattgtatttatattttttcatttgtataaatgtacagcattcaagaaaaaaaaagtactagATCCTATTagcatttattaaatcaaagcttgtaaattattttaatgtataatgtttattttcaatgttagGTATTATTTCCATGGCCTACtagtttgtttgattgtttttaaacaaataaagtgatgcttgtatttga

Function

GO:

id name namespace
GO:0008272 sulfate transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0015382 sodium molecular_function

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137473 lncRNA upstream 32594 5098996 ~ 5106948 (+) False AMCG00006460
TU137465 lncRNA upstream 94909 5044416 ~ 5044633 (+) True G109786
TU137459 lncRNA upstream 117364 5021296 ~ 5022178 (+) True G109780
TU137458 lncRNA upstream 119139 5018089 ~ 5020403 (+) True G109779
TU137446 lncRNA upstream 214748 4923132 ~ 4924794 (+) True G109767
TU137535 lncRNA downstream 202664 5352456 ~ 5353170 (+) True G109837
TU137646 lncRNA downstream 396415 5546207 ~ 5546436 (+) True G109933
TU137710 lncRNA downstream 649808 5799600 ~ 5804559 (+) True G109978
TU137770 lncRNA downstream 833998 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA downstream 834164 5983956 ~ 5984250 (+) False G110024
AMCG00006459 mRNA upstream 4827 5127859 ~ 5134715 (+) True AMCG00006459
AMCG00006460 mRNA upstream 32520 5094271 ~ 5107022 (+) True AMCG00006460
AMCG00006461 mRNA upstream 48865 5079750 ~ 5090677 (+) True AMCG00006461
AMCG00006455 mRNA upstream 122856 5015646 ~ 5016686 (+) True AMCG00006455
AMCG00006452 mRNA upstream 171509 4961206 ~ 4968033 (+) True AMCG00006452
AMCG00006468 mRNA downstream 6806 5156598 ~ 5181731 (+) True AMCG00006468
AMCG00006464 mRNA downstream 60236 5210028 ~ 5231466 (+) True AMCG00006464
AMCG00006467 mRNA downstream 93986 5243778 ~ 5301376 (+) True AMCG00006467
AMCG00006466 mRNA downstream 158705 5308497 ~ 5311416 (+) True AMCG00006466
AMCG00006465 mRNA downstream 172571 5322363 ~ 5345992 (+) True AMCG00006465
TU137492 other upstream 10713 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 40844 5080881 ~ 5098698 (+) True G109795
TU137475 other upstream 40844 5080881 ~ 5098698 (+) False G109795
TU137460 other upstream 113636 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 611804 4524806 ~ 4527738 (+) True AMCG00006445
TU137762 other downstream 829270 5979062 ~ 5982909 (+) True G110023
TU137766 other downstream 831404 5981196 ~ 5982909 (+) False G110023
TU137861 other downstream 1370073 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 1762084 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 2503880 7653672 ~ 7655194 (+) True G110279

Expression Profile