RNA id: AMCG00006459


Basic Information

Item Value
RNA id AMCG00006459
length 1488
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00006459
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5127357 ~ 5134715 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGACGGAAACACTGTCACCCCGGAGCCCCGGGCGGCTGCAGGTGTCCGGCCGGAGGGAGAGCAGAGCCCAGCGGCCGAGGAGGGACCTGCCGGGCCGCCTGCCGACGCGCCCCCCGCTGCGCACACTCTTAAAATCATCCTCCTCCCCGAGGGCCACGTGTGGACCATGGCGTTTGCGATCTCCACGTCAGCCGGGGGTCTGAGGGAGCACTTCGCCAGCGAACTCAAAATCCCAGCCAGCacTGTCATGCAGAAGAGCCAGTCGCAGCAGGTCACTAACACAACATCCACACAGATGACCAAGATAGGGTGCTATGTGTCAGATGTGACGGACAGGCTAATAGAACCGAAAGGATATGTGAGGGCGGACGAACATCACGCCCAGAGACTGAAGGCACgagtgtctgtgtgcgtgtgttcaGAGTGGCGGCGGGAAGAGGAGGAGCGCATCAATGCCACGCTCTCGGGCCCGGAGCGGAAGGCAGCGTTGTGTGCGCTGCTGGAGCAGGAGACGCAGCTCATCGCCTCCATCGGGAGACACAGGGTGGCTGCAGGAGAGGAGAACAGCAAGAAGTCTGTGCAGGCCTTCCTGGAAAAGTGTGCGGAGCCGAAGAAGTGGAAGGCATTTGACGGAAAGATCACGGAAATGGACATGCAGTACACGATCCGAGCCCGGGAGCTACGAGACCTCTACGCCAGCATCAACATGAAGCATCTCGCCCGAGACGAAAGACTCGATGTCCTCCTCACATTGAAACACACAGTCAAGgagCACGACTGCAAGCTGACTCGGGACATAGTGGAGCTGATCGACAGGGAGGCTGATCTTTTAACGAGAGGAGTCAAGGACACTAATCTGGAAGGGCTCAGAAAGAGGATTTCCACGCTGTTCCtgcagtttattaaaatgcCGACCTTTAACCCCGCGTTGACCAAGCTCCTCAAGGTTCCCCAGGATCCGGCACAGCTACGGAAGAACATTCACTTCTGCCCGGGATGCAAGAGCTACCTCCCCCGCTCATCCTTCTCTCTGAAGGCGACGTCGCGCTCGGTGGGGCGCTGTCGGCAGTGCGACCGCCTGGACAACGAGGCGCGGCGCCGAGAGGACTTCTCCCAGTACAGAACCATCCTCCGACTGCTGCGCGATGGAGAGGCCCAGTCCGACAAAGGCAATATCATCGCTTTCTTACTGCAGGAGCAGGACCTGCAGTACCTGGTGGACGTGATCTGGGGCCGCCAGTCCGCTCTGAGCGCGTGCGACGACCTGCATGACCTCGATGAGGCCGTGGCCCACGCCAAACTGGACCAGACCGAGCAGGCCTATGGGGTTGTGTTCATCCGTCAGATCAAGCATAAGCACACTTTGGCGAAGAAACACTTCTCCCAGATCCCAGCCATGGCTCAGTTCTTATGCAGTCAGGAGTCCCGCTCTCAGCGCACCCTTTTAGTGACTCAGCCAGGTAACACGGTGACACAGGCGTAG

Function

GO: NA

KEGG:

id description
K24838 IQUB; IQ and ubiquitin-like domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137473 lncRNA upstream 20911 5098996 ~ 5106948 (+) False AMCG00006460
TU137465 lncRNA upstream 83226 5044416 ~ 5044633 (+) True G109786
TU137459 lncRNA upstream 105681 5021296 ~ 5022178 (+) True G109780
TU137458 lncRNA upstream 107456 5018089 ~ 5020403 (+) True G109779
TU137446 lncRNA upstream 203065 4923132 ~ 4924794 (+) True G109767
TU137535 lncRNA downstream 217741 5352456 ~ 5353170 (+) True G109837
TU137646 lncRNA downstream 411492 5546207 ~ 5546436 (+) True G109933
TU137710 lncRNA downstream 664885 5799600 ~ 5804559 (+) True G109978
TU137770 lncRNA downstream 849075 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA downstream 849241 5983956 ~ 5984250 (+) False G110024
AMCG00006460 mRNA upstream 20837 5094271 ~ 5107022 (+) True AMCG00006460
AMCG00006461 mRNA upstream 37182 5079750 ~ 5090677 (+) True AMCG00006461
AMCG00006455 mRNA upstream 111173 5015646 ~ 5016686 (+) True AMCG00006455
AMCG00006452 mRNA upstream 159826 4961206 ~ 4968033 (+) True AMCG00006452
AMCG00006454 mRNA upstream 196950 4926843 ~ 4930909 (+) True AMCG00006454
AMCG00006458 mRNA downstream 4827 5139542 ~ 5149792 (+) True AMCG00006458
AMCG00006468 mRNA downstream 21883 5156598 ~ 5181731 (+) True AMCG00006468
AMCG00006464 mRNA downstream 75313 5210028 ~ 5231466 (+) True AMCG00006464
AMCG00006467 mRNA downstream 109063 5243778 ~ 5301376 (+) True AMCG00006467
AMCG00006466 mRNA downstream 173782 5308497 ~ 5311416 (+) True AMCG00006466
TU137474 other upstream 29161 5080881 ~ 5098698 (+) True G109795
TU137475 other upstream 29161 5080881 ~ 5098698 (+) False G109795
TU137460 other upstream 101953 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 600121 4524806 ~ 4527738 (+) True AMCG00006445
TU137384 other upstream 650289 4476934 ~ 4477570 (+) True G109714
TU137762 other downstream 844347 5979062 ~ 5982909 (+) True G110023
TU137766 other downstream 846481 5981196 ~ 5982909 (+) False G110023
TU137861 other downstream 1385150 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 1777161 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 2518957 7653672 ~ 7655194 (+) True G110279

Expression Profile