RNA id: TU137492


Basic Information

Item Value
RNA id TU137492
length 555
RNA type TUCP
GC content 0.62
exon number 3
gene id AMCG00006459
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5127357 ~ 5134715 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTCTGCGCTAAAGCCAGCAGTCATGTGACCGTCTCCATGGCAGAGACACAACAATCGCGGTTACAAGTAACACTAATGTGTCGGAGGAAGAAACTGTTTCCACTGCGAGTGATCAGAGGATGTCTGACGGAAACACTGTCACCCCGGAGCCCCGGGCGGCTGCAGGTGTCCGGCCGGAGGGAGAGCAGAGCCCAGCGGCCGAGGAGGGACCTGCCGGGCCGCCTGCCGACGCGCCCCCCGCTGCGCACACTCGTTCCCAGCAGACGCCGGAGGAAGAGGACAACCCGGGCCCCCCGGCCCCCGGACACAGCGCCGCTCAGATGGACCGGCCCCCGGAGCAGGGTGCGAGTCCGGCAGATGTCCATACAGTGGACAACGAGGTGGTAGACTCTGTCCTGACTGGAAAAATTACAGCAACAGTTAAAATCATCCTCCTCCCCGAGGGCCACGTGTGGACCATGGCGTTTGCGATCTCCACGTCAGCCGGGGGTCTGAGGGAGCACTTCGCCAGCGAACTCAAAATCCCAGCCAGCGTGATTCACATATCGTTTNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137473 lncRNA upstream 20409 5098996 ~ 5106948 (+) False AMCG00006460
TU137465 lncRNA upstream 82724 5044416 ~ 5044633 (+) True G109786
TU137459 lncRNA upstream 105179 5021296 ~ 5022178 (+) True G109780
TU137458 lncRNA upstream 106954 5018089 ~ 5020403 (+) True G109779
TU137446 lncRNA upstream 202563 4923132 ~ 4924794 (+) True G109767
TU137535 lncRNA downstream 223627 5352456 ~ 5353170 (+) True G109837
TU137646 lncRNA downstream 417378 5546207 ~ 5546436 (+) True G109933
TU137710 lncRNA downstream 670771 5799600 ~ 5804559 (+) True G109978
TU137770 lncRNA downstream 854961 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA downstream 855127 5983956 ~ 5984250 (+) False G110024
AMCG00006460 mRNA upstream 20335 5094271 ~ 5107022 (+) True AMCG00006460
AMCG00006461 mRNA upstream 36680 5079750 ~ 5090677 (+) True AMCG00006461
AMCG00006455 mRNA upstream 110671 5015646 ~ 5016686 (+) True AMCG00006455
AMCG00006452 mRNA upstream 159324 4961206 ~ 4968033 (+) True AMCG00006452
AMCG00006454 mRNA upstream 196448 4926843 ~ 4930909 (+) True AMCG00006454
AMCG00006458 mRNA downstream 10713 5139542 ~ 5149792 (+) True AMCG00006458
AMCG00006468 mRNA downstream 27769 5156598 ~ 5181731 (+) True AMCG00006468
AMCG00006464 mRNA downstream 81199 5210028 ~ 5231466 (+) True AMCG00006464
AMCG00006467 mRNA downstream 114949 5243778 ~ 5301376 (+) True AMCG00006467
AMCG00006466 mRNA downstream 179668 5308497 ~ 5311416 (+) True AMCG00006466
TU137474 other upstream 28659 5080881 ~ 5098698 (+) True G109795
TU137475 other upstream 28659 5080881 ~ 5098698 (+) False G109795
TU137460 other upstream 101451 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 599619 4524806 ~ 4527738 (+) True AMCG00006445
TU137384 other upstream 649787 4476934 ~ 4477570 (+) True G109714
TU137762 other downstream 850233 5979062 ~ 5982909 (+) True G110023
TU137766 other downstream 852367 5981196 ~ 5982909 (+) False G110023
TU137861 other downstream 1391036 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 1783047 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 2524843 7653672 ~ 7655194 (+) True G110279

Expression Profile