RNA id: AMCG00006460


Basic Information

Item Value
RNA id AMCG00006460
length 2646
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00006460
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5094271 ~ 5107022 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCTGCACCACCTTCTCCGGGACTCCCTCCGAGGAGCTGACAGACAGCGGCTACCAGGTCAGCGGCTGCCTCGGGCCCCTGCACTGCCTCGTCCTGCCCGAAGACGAGCTCTATCTGCCCCTGTCCTCCGTGGCCCGAGGCGAGGGCTCTTGCCTCCTGATGGGGAAGTTCCTGTTAGATGTGAACGTGGGTGCTCTGGAGGACCGTAACATGAACTACTTTAGCCCTGCGTGCGCTGCGTTTCACCTTAAAAAACGGACAGGCAAAGCCAGAGGACCTGCATTGCCCATGGCCACAGTGGACATAAAGAATCCAGAAATCACGAACATGCGGTACTCGAACTCCCAACACGCTCCCAACAACATCCTGCACCCCAACCTCGTCAAGGACAAGAAGAAAGTCAAGGGGAAAAAGAAGAAGTTGACCAAGGCAGACATCGGGACCCCCAGCAACTTCCAgcACATTGGACACGTTGGCTGGGATCCAAACACAGGCTTTGATCTGAATAATTTAGACCCGGAGCTGAAGAACCTGTTTGATATGTGTGGGATCTCGGAGGCACAGctgaaagacaaagaaacatCCAAAGTGATCTACGACTTCATCGAGAAGAAGGGCGGGGTGGAGGCGGTAAAGAATGAGCTGCGCAGGCAAGccCCCCCACCGCCCCCGTCTCGAGGAGGccctcctcccccccctccccctcacagCTCGggccccccgcccccacctccAGCCAGAGGCAGAGgcgcccccccacctcctcctccctcccggGCCCCTACGGCCGCTCCGCCACCGCCCCCTCCCTCCAGACCCGGCATGGGAGCCCCTCCACCGCCGCCACCCCCGACCCGTGGCCACCTACCCCCACCACCGCCCCCCTCACACGCCTCCATGGCCCCCTCGGCGCCCCCGCCTCCGCCACCCCCTCCATCCGGTCTGGGTTCAGGCGGAcccccgcctcctcctccacctcccccgCCGCCCGGACCCCCGCCTCCCGGACCTCCACCGCCTCCAGCTCCCGCCCTGGACACGGACCTGCAGTCCCCACTGGGGGGTAAGTCAGCACTGCTGGACCAGATCCGGGAGGGGACCCAGCTGAAGAAGGTGGAGCAGAACAACCGGCCGGTGTCCAACGTGGGACGGGACGCCCTGCTGGACCAGATCCGACAGGGTATCCAACTGAAGACGGTAGCGGACGGCCCCGACTCGGCCCCTTCAACGCCAGGTCCCACTGCGGGCATCGTGGGGGCGCTGATGGAGATGaagacgacgacgacgacgaagAGGAGGATTTCGACGAGGACGATGAATGGGACGACTAGTCCTGCTCCTCCTCTGTGGACGGATCAAAACCCTGAATATGTTCGAGTCTCTCTACAAAAAacttattaaaatgataatgtaAATGTTCTATCGATTTtttgctgtatatttttgttgccttctgctttttttaattaatctgtgcAATACCTCATTTAATCTGTAAAGGTTTGTCCCGTTTCTTCTGTAAAGTTACTCCCTATTAACCGCGTGCAATCTGACGAACACTCGGGGCGAACACTTGACTGCTAGATctgaatgttattttctttcatcgCTGAGGGAGTTGAGGAAGGTGTCAAGTAAAACTgacgaggaaaaaaaaaaaaaaaaaaaaagtcctccATGTTGTAATTGTTAGCAAATGCAAGATAACACTATTTTCATACCCAACTTTTCTGTACCTTaaattttcttattaaaatccTAGTATAgcactattttttttctttataaagatTCAGCTCTTAGACTTCTTAGCCCCGTCATTTCCAATGTAAAGATAAACGGACGCTGAGGTAGATCTATTTTTGCACGATCGAGAAGAGAAAAGTCACTACGAAAGGGTACAGATCCTGTATTCAGCAATATGCTTTAATGGCTCCGAGAATTCACTACAGGCGTACGTCAACGTCGTTAATGTCTGTCACAGTGTAGCAGCACTCTCTCATCAAGGGAGGAAGTCATGTTttcgttttgttgttttttatcgTTGGCACCTTGTATACCTGGTTTATGTTTAGGAAATCCAtacagaatttatttttcttctctttgttttgtctCTCCTTTTGTACTGTAGCAATCATAAGATTATGTTGGTGGGAATCAGGTCAGTgttcatttaaagaaagaaaggaaaaaaaaagactaacgccatctgtttatttaaaatcctgCAACTTACTGTTACACATCGTCGGTTCATATATTAAAGGCTGCAAGGGACGAATCCTCTCTCATTTAGGATTTTTTCCGAGGGGCTGTTGCTTGACACTTgcaaggtaaaataaataaataaaatgcctgtAAAGACTCTTGAACCTTTGTGTAGTAATGATCGCTGTTTCTAACAGTATTGTTGTACATGGTTGACTTCTACAatctttcattttctcctgGGGTTTGTGATGCATTAGAGACCGCAATATCGACGTCAAACCCTCCAAATAGGTTGGAAAAGGAATGGAATGATACTAAATTgtatactgaaataaatgttaatatttacgGATCATCTGGTGTGTGCTTTGATTCTTGGGTGTTTTGCATTCTACCAAAAGTTTGAAATGTGTATCGACTCTATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137465 lncRNA upstream 49638 5044416 ~ 5044633 (+) True G109786
TU137459 lncRNA upstream 72093 5021296 ~ 5022178 (+) True G109780
TU137458 lncRNA upstream 73868 5018089 ~ 5020403 (+) True G109779
TU137446 lncRNA upstream 169477 4923132 ~ 4924794 (+) True G109767
TU137391 lncRNA upstream 573022 4518917 ~ 4521249 (+) True G109721
TU137535 lncRNA downstream 245434 5352456 ~ 5353170 (+) True G109837
TU137646 lncRNA downstream 439185 5546207 ~ 5546436 (+) True G109933
TU137710 lncRNA downstream 692578 5799600 ~ 5804559 (+) True G109978
TU137770 lncRNA downstream 876768 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA downstream 876934 5983956 ~ 5984250 (+) False G110024
AMCG00006461 mRNA upstream 3594 5079750 ~ 5090677 (+) True AMCG00006461
AMCG00006455 mRNA upstream 77585 5015646 ~ 5016686 (+) True AMCG00006455
AMCG00006452 mRNA upstream 126238 4961206 ~ 4968033 (+) True AMCG00006452
AMCG00006454 mRNA upstream 163362 4926843 ~ 4930909 (+) True AMCG00006454
AMCG00006453 mRNA upstream 167491 4921018 ~ 4926780 (+) True AMCG00006453
AMCG00006459 mRNA downstream 20837 5127859 ~ 5134715 (+) True AMCG00006459
AMCG00006458 mRNA downstream 32520 5139542 ~ 5149792 (+) True AMCG00006458
AMCG00006468 mRNA downstream 49576 5156598 ~ 5181731 (+) True AMCG00006468
AMCG00006464 mRNA downstream 103006 5210028 ~ 5231466 (+) True AMCG00006464
AMCG00006467 mRNA downstream 136756 5243778 ~ 5301376 (+) True AMCG00006467
TU137460 other upstream 68365 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 566533 4524806 ~ 4527738 (+) True AMCG00006445
TU137384 other upstream 616701 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 932298 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 938522 4152816 ~ 4155749 (+) True G109570
TU137492 other downstream 20335 5127357 ~ 5128829 (+) False AMCG00006459
TU137762 other downstream 872040 5979062 ~ 5982909 (+) True G110023
TU137766 other downstream 874174 5981196 ~ 5982909 (+) False G110023
TU137861 other downstream 1412843 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 1804854 6911876 ~ 6912254 (+) True G110163

Expression Profile