RNA id: AMCG00006463


Basic Information

Item Value
RNA id AMCG00006463
length 1941
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00006463
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5111162 ~ 5114090 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCTCTGTAAATCCATGTGGTTGACGCCTGGTTCCCAAAAAAGAAAGTGCATCATGACCAGACACATTGTTCCCCGTCCCTGATGATTCCCCTTTAAaagctcctgcagctgctgccccAGACAGATGTACATAAACAAATTGATAAGGACGCTGGGCAGCGACTGCGCTCCGCTCTGCAGACGAGAACGCGACTCGAGCTGAAATagtaatcattttaaacagattgtGCGGAAGCAGTGGGCTATGACTGCGTTTGGGTACCGCAAGGAGCTGGATAAATACGAAGACATCGACGAGGATGAACTCTTGTCTTCCCTCACCGCTGAGGAGCTGCAGGAGTTGGAGAGGGAGCTGTCTGATTTGGACCCGGACGACAACGTCCCCATCGGACTCAGGCAGAAGGACCAGACAGAGAAAACCCCCACGGGCACATTCAGCAGAGAGGCCCTGCTACAGTACTGGGAGAACGAGACTCGGAAACTCCTGGAGAATGAGAGGACGGGCTCGGGACTGAAACAGgaggaggaaggagagaaacACACCGATGACAGTGATGAAGACTGCGTGACGGAGAGTAACAGTGAGGCTTCGGAAGCAGAGGCATACactgaagaggaggaggaagaagaagaagaggaggaggaaaaggaggaagaggaggaggaagaggtagaggaggaggatgaaagtgaacatgaagaagaagaaaaagtagAAGTAGTAGCAGCTGTGACTGAAAATAAAGTTGCAGTTGAAGATGAAGGAGAGAAAATCAGGAACAGGACTTTGCTGCTAAAGGAACTGAAACCTTTAAACCTTTGTAACGGCCAGactgaagacaaacaaaatggcGCTGCTAGAAACGGCACACAACCAAGCAGCGAGGCGACAGCCAGCCGTCTGTGTGGAAACCCAACGGTGATCGACGACGCCCTGGAGAAGATTGTGAACAACGACGCCGACACCAGCGAGGTGAACCTGAACAACATCGAGAACGTCTCGCAGGACACGCTCATCCGCTTCGCCGAGGCTCTGAAGACCAACACGGTCGTGCGGGTCTTCAGCCTGGCCAACACACACGCTGATGACCGCGTTGCCTTCGCCCTGGCCCAGATGCTCAAGGAGAACACCTGTATCACCAACCTGAACATCGAGTCCAACTTCATCACCGGCAAGGGCATCCTGGCCCTCATGCGGGCCCTCCAGCAGAACACGGCCCTCACAGAGCTGCGCTTCCACAACCAGAGACACATCTGCGGGGGGCAGGTGGAGATGGAGATTGCCAAGCTCCTGAAGGAGAACACCACTCTGCTCAAGCTGGGATACCACTTTGAGCTCCCGGGCCCGCGCATGAGCATGACCAGCATCCTGACGAGGAACCAGGACCGGCACAGGCAGAAGAGGCTGCAGGAGCAGAGACAGCTGGGGCTGGAGAGGAAGGAAGGGCCAGAGGCACCGGCCAACCCCAGGACCAGTGCCCTGCAGAGAGCGACGCCAACGTCTTCCCCTTATTCTTCGCCGAAGAGCTCCCCGTGGTCCTCTCCCAAAGTGCCCCGAAACGCCCAGCTCAAAAAGAACGCCCCTCCGccgcctccgcctcctcctcctccacctcctcccccacctcccccacccccaccatgCCCACAGAAGAGCAAGCCCACCAGGAAGATAGCCGAGGCCATCAAACTCCATGAGCAGTCCAGAAAGAGACAGCAGGCGGGGCCACAGAAATCGAAAGGCAGGAAAGGCAAACGGGCGGAGAAGGAGAACAATATCCTGAAGGAACTAAAGAACGCTCTGAAGCCCATCTGTGAGAAGAAGGCAGAGGAGACGTCCCGGCCCTCGACACCACAGAGGTCCCTGCACGACGACCTCATGTCAGCCATCCGGAACAGCAGCACGAGACAGCTGAGAAGGgtaaatatacacaaatga

Function

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137461 lncRNA downstream 90487 5020037 ~ 5020675 (-) True G109782
TU137457 lncRNA downstream 139974 4970864 ~ 4971188 (-) True G109778
TU137436 lncRNA downstream 363928 4746970 ~ 4747234 (-) True G109761
TU137408 lncRNA downstream 589793 4515937 ~ 4521369 (-) True G109736
TU137499 lncRNA upstream 22428 5136518 ~ 5136744 (-) True G109815
TU137574 lncRNA upstream 231593 5345683 ~ 5347227 (-) True G109875
TU137582 lncRNA upstream 295250 5409340 ~ 5409571 (-) True G109878
TU137623 lncRNA upstream 320847 5434937 ~ 5435764 (-) True G109916
TU137664 lncRNA upstream 463380 5577470 ~ 5580727 (-) False AMCG00006476
AMCG00006456 mRNA downstream 43422 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006457 mRNA downstream 59971 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006447 mRNA downstream 618632 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006448 mRNA downstream 627282 4483234 ~ 4483880 (-) True AMCG00006448
AMCG00006441 mRNA downstream 634515 4454881 ~ 4476647 (-) True AMCG00006441
AMCG00006462 mRNA upstream 1626 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006470 mRNA upstream 236114 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006471 mRNA upstream 322453 5436543 ~ 5483801 (-) True AMCG00006471
AMCG00006473 mRNA upstream 396499 5510589 ~ 5513330 (-) True AMCG00006473
AMCG00006474 mRNA upstream 404581 5518671 ~ 5534047 (-) True AMCG00006474
TU137277 other downstream 945562 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2781171 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2980907 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3087019 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3229325 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 900014 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1671223 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1964299 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3608298 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3673728 8787818 ~ 8794062 (-) True G110520

Expression Profile