RNA id: AMCG00006470


Basic Information

Item Value
RNA id AMCG00006470
length 7305
RNA type mRNA
GC content 0.51
exon number 29
gene id AMCG00006470
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5350204 ~ 5390268 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttctccttttttccagTTGACGTGACACACGGATACTACAGGACTCAACGCAGATTCTCTGAAGACATAGACTGGTCTTATGCAGGAACTTTAAACCAAAATAACTGGGGAAAGAAATATCCTTCCTGTAACAATGCCAAACAATCCCCCATCGATATCGATGAAGATTTCACTCAAGTCAAAGTGCAGTTTCAGAAGCTGAGGTTTGACGGCTGGCAGAAGGAGACGTCGGACAAAACGTACATTGTGAATGACGGTAAAACAGTTGCGATTCATCTCAATGGAGACTACTATATCAATGGAGGAGGACTCGGATCCAGATATAAAGCTGGCAAGATCACTTTCCACTGGGGAAAATGCAACTCAACTTCTGACGGCTCAGAACATAGCTTGAGTGGACAGAAATTTCCCTTGGAGATGCAGATTTATTGCTTTGAATCTAATGTGTTTCCAAACATCGATGAAGCAATAATAAAGGGGGGAAAGATAACAGCCCTCTCGGTTTTGTTTGAGGTTGACCCTGAAGACAATGAAGACTTTGACGCTATTATAAATGGTGTGAACAGCGTGAGCCGATTTGGCAAGAATGCCTCAATGGACCCGTTCACACCGATGAACTTACTCCCAAACTCCACGGACAAATACTACATCTACAATGGGTCACTGACGACTCCGCCGTGCTCGGAAACGGTCCAGTGGATTGTGCTCAAACACACCGTCTCCATTTCTGAAGTCCAGCTGGAGGTATTCTGTGAGGTGCTGACGATGCAGCAGGCCGGCTATGTCATGCTGATGGATTATTTGCAGAACAACTTCAGGGAGCAGCAGTATCAGTTCATGGGACAAGTGTTTTCCTCTTACACTGGGACAGAAGAAGTGCAAACTCCTGTTTGTAGTTCAGAACCAGAAAACATCAAAGCTGACTCAAACAACTACACCAGCATCCTGGTGATGTGGGAGAGACCTCGGGCCGTATACGACGAGGTGATTGAGAGATACGCGGTCACCTATCAGAAACTGGAAGGAGAGGACCAGATAAAGCAGCAGTATCTGACGGATGGAGACCAGGACGTGGGTGCGATTATTCATGGTTTGCTGGCCAACACGAGCTATGTGATCCAGGTGGTGGCTGTGTGCACCAACGGCCTTCAGGGACGACCCAGCGATCAGGTTATTGTGGACATGCCTTTGGATGACCCCGagAGTGACCCTCCTGATTTTGATGGTACCGAAGAGGCTTCAGATGAATTGGAGGTGGAATCTAAGCTGAACTCCAGAACATCCAGTCCAGATTCCGATTCTGACGCTGCAAAGACAAGGTTGGGCAAGGAAATGGAGGCCGCTGAGCTCACCACTTCCGAGTATGAGATCGAGCAGGCAAGTTCCTCCTACAGCGCTGTCACCAAAGAGTTATCTGTGGAAGTCTCTGATGAAACGAACACCAAGGACCTGCCTGCCAAGGAAGATGCTGAAACTTCAGAAACGGATGAGTTTGCTGGCCTTCCCCTAGTGACACAGATTTCCAGTACCGGGAACACGATCCTGGGCGATCGAACATCAACCGCCTCCCAGAGCGAGGGAAACCTTCTCGAGGAGAGCTACTCGAAACCACAAGTCTCCACAGAAGGTCCCAGCAGCTTCCAGACTGCCAGCGACGCCGACCCAGACATGACAACCGGGCGACTTGCAGACTCCTCCGACAGAGCGCCTCCCGCCGAGGACAGAGTCAGTGGTTTGCCTCCAGCCAGAAACACCAGTGTGGTGACCGATATCTATTACGAAGATGCCAGCCTCGACTTATCGCCCAGGACGCCGTCTTCAGCTCCCGGTGGTGAGACCCAAAACAGCATCACAGCGGCCCCGGCAGTGTATGTCACCGCTTTCCCCCCGGGCCCTGTCCGCACTACCTCTGCGAGTCCCGAGCAGGGGCCTCCGCGTCCGTCTGCCTCCGCCTCCGGGGACGTTCTGTCTCAGACCACTCAGCCCGTGTTCAATGGTGAGCAAGCACTTCACACTACCTCTGGTTCCCTTATTAGTGACATGCTCCTCCGCTCTGACCCTGCATTAACTGACCCCCCGATGTTGCATCAAGCTACCCTCGCGGCCTCAGATACTGAGAACCCGCTGCATGCTACTCCTGTGTTACCCGGTGTCGCTGTGTCAACCCTCCCCTCCTCTAGAGATGTGTTACCCGAACGCCCTCCTGCCTCTTCTGCTCTTGAGCTGCTTCGTAGTACAGCTGCCTTTCCCCAGAGCGATGTCTCGCAGCCAGCCGTACCCGAGGCGGATAGGGGCACCCTGCATGCTACAGTGATGTTGTCTGATGATGATCTGTCCCTTCAGCCTACTCCCACTCTCTCCTCCAGTGTGTCGCTTCTAAAGTCTACCCCTGTTCTGTCTGAGGCCTCTTGGTTTGACAGTGAGACTGAGACTCCGAGTGAAAGTACTGTTGTTTCCAGTGGTTGCGTAGGGTCTGATGCAACACGTGTGGACGAGGTCGCTACACTGCTTAGGTCTACCCCTGTTTTATCTAGTAGTACTCTACCCCTTCAAACTTTACCTGATTCATCTGGCACTACACTATTATTGTCTGTTTCTGACTGGGAAAGCCTTCACACTGCTAAGCCTTTCAGCTCTGTCTCTGCACCCCAAACTGCGTCTGCGTTCTCCACCTCTGGTCAAGCGCTTCAGCCTTCTGTTCCTCTGTCCGGCGACGACACTCTGACTGTGGCTCCTCCCGCTTTCGCTAGTAGGGAAGCGTTAGTCTCTCTCACCGGGGACCGCGGTGAATCCCGGACAGCCGTGGTGCATGTGGAATCTGCATTGACGGGGGATGTTTTTCCTGGGCTCTCTAGTGCGGACGGGACTCTCCTCCTGGTTACTTCTGCCACTCCGGACCTTGAACCTACCGCTCCTACGTCTGTCACTGAAGGATGGGTTCAGATTAACCCCTCGCCCCTCTCTAGTGCCACCTCTCTGCATGCCACCCTGTATTTACTGCCAGATACACTGCTTCCCTCCTCTAGTTCTTCAAGCTCCTCCAGCTCTGACACTTTTGCTGATGGCTCTGGTAGATTTTATACAGTGCAGGATGCTTCTGCTAGTGAAGCCCCCTTTGCCCTTCGCCCTACAATCTCTGTTCCTACCTTAGACACCAGCATCTTAGGGTCACCCCAAGATGCGTCTGCTGCATCGCGTGCCCAAGCTTCTGATTTTAGTCCTGTCAGCAAGGTAGAGCCTTCCCCTGGGACACCCACGGGCACCGTCTCATCTGTGTCCAGTGTAGCCCTAGGTGAACGCGAACTGCGTCTGCTCGATGCCAGCCTGGCTGCCTTTAGTGGAACGTTGCTTCCGAGCACGGCAGATGCCCAAGGGGAGATCGCAACTCAGCAGATCGACTCTGCCCCTCAGCTTTCCTCGTGCTTCTCCAGCTGTGCCGCTTCAGTTGACGGTCGAGCTGTGGCCGCAGCCAGCGTGATCTTCGCAGACACCTTAAGTGCAGAAGCATCTTCTGTTTCCGCTAGCATAGTGCGTCCAACATCATCCGCTTTGCCAGGCCTCTGGACGCAACACAGCATCGCTTCTTCTATCCCCCTTTATGTAGACATAGATGCCACTCCTGCGCTGTCCACCGGTGGAGTGTCCCTCTCTACCATGTTTCCTAGCCATAGTCACTCTCCTGTTTTTCCTGATTCTAAGTTCCAGCTTCCTGTCGACTCCAATAGTGATTTGTACGTTTCTGTTGCAGCTACCAGAGCCAGCAGTCAGAGCCCTGTAACCCTCATTAATTTGGCTCCTCCCCCTGACACCCCAGCCCTGTCATCAGCTCCTCCCCCTGATGCCGATTCCACCCCCCCGCTGTCTGGGGACGACCAGTTAGAGAGTAGTACCGCTGGCAGAGTGTTATACATTGAATCTCAGGAAGACTTAGAGCAGGATTGGGATAGAAACCAAAGCGTAACCCCCGAGAAACCCTCGCCGCCCCACGCAAAGACGGCCGCGGCGAAAGCTCTCGACGCGCCCGCGGTAACGCCGACCCCGGACACGCCCCCCCGCCGCGGGAGCCAGGCCTTCGCAGCGCCGTCCGAGAGCGGGAACGGGACGGACGGCTTTTCGCAAGAGAATGGGGACGAAGCGAACGGGACGAGCTCCAGGGCCTGGCCGCTGGGGAACGCGGACGAGGAGAGCGGCTCGGGCCAGGGGACCTCGGGGAGCTTCAACGACAATGAGACGTCGTCAGACTTCAGTATCCCTGACTACTCGGACAGGGAGTCTGACGATGCATCGGAAGCAGAGGCCAGTAACAGCAGCCACGAGTCCCGGATCGGCCTAGCGGAGTCGGGGGAGGCGGAGAAGCGGGCTGTGGTGCCCCTGGCTGTGGTGTCCACTCTCACCCTGCTGTGCCTGCTGGTTCTAGTGGGGATCCTCATTTACTGGAGgaaGTGTTTTCAGACCGCTCACTTTTATCTGGAGGACAATACTTCTCCGCGAGTGAtttctgccccccccacaccggTGCTCCCAGACTCAGACGAGCACGAGGCCATTCCCGTCAAACAGTTTGTGAAACATGTGGCGGATCTACACGACAGCAACAAGTTTTCAGAAGAGTTTGAGATATTGAAAGAGTTTTACGAGGAGATTCAGAGCTGCACCGTAGATCTGGGCATCACATCCGACTGCTCCAACCACCCcgagaacaagaacaagaaccgCTATATCAATATTGTGGCCTATGACCACAGTCGAGTGAAACTGTCACCTGTTCCGGAAAAGGAAGGGAAGAACAGTGACTACATCAATGCAAACTACGTTGATGGGTTCAACACACCCAAGGCCTATATTGCAGCGCAGGGGCCTTTAAAATCGACTGCGGAGGATTTCTGGAGGATGATATGGGAGCATAACGTCGGAGTCATAGTTATGATCACTAACCTTGTTGAGAAAGGACGAAGAAAATGTGATCAGTACTGGCCTACTGAAAACAACGAAGAATATGGATGCTTCCTGGTGTCACTGAAGAGCACTAAAGTACTGGCATATTACACACAGAGGCACTTCACTGTGAGGAACACCAAGATCAAAAAGGGCTCTCAGAAAGGGAGACACAATGAACGCACCATTGTGCAGTACCACTACACACAGTGGCCAGACATGGGTGTCCCTGAGTACACACTGCCAGTGCTGACGTTTGTGCAGAAGTCTTCCATGGCCAGGACTAGTGACATGGGCCCTGTTGTAGTCCACTGCAGTGCGGGTGTTGGGCGGACTGGGACTTACATTGTGCTGGACAGCATGTTGCAGCAGATAAAGACTGAAGGCACGGTGAACGTCCTGGGCTTCCTGAAACACATACGAACGCAGAGGAACTACCTGGTGCAGACTGAGGAGCAGTACGTGTTCATTCACGACACCCTGGTCGAGGCCATCCTCGGCAAGGAAACCGAGGTGCCGGCCAGCCACATTCACAGCTACGTGAACGCCCTCCTGACCCCGGGGCCGTCAGGAAAAACACGACTGGAGAAAGAGTTCAAGCTGATGACCCAATCCAACGCCAAGCAGTGTGACTATTCTGCAGCCCTGAAACAGTGCAACAGGGAGAAGAACAGGAGTTCCTCGCTGATGCCCGtggaaAAGTCCCGAGTCTGCCTGCCGTCTGTGTCGAGTGATGCCTCGGATTACATCAATGCGTCCTACATCATGGGCTATCGGCAGAGCTCGGAGTTCATCGTCACCCAGAACCCTCTGCCCAACACCACCAAGGAGTTCTGGAGGATGATCTGGGACCACAATGCCCAGATCATCGTCAAGCTTCAGGATACACTTAACCTGGTGGACGATGAGTGTGTGTACTGGCCCAGCAAAGATAAACCGATCACCTGCGAGACCTTCACCGTGACTTTGACCGGAGAAGATCACATCTGCCTTTCCAATGAGGAGAAACTGGTCGTGCAGGATTTCATCTTGGAGGCCACACAGGATGACTACGTCTTGGAAGTGCGACAGTACAAGTCTCCAAAATGGCCGAATCCAGACAGTCCCATGAGTAAGACCTTCGAGCTGATCAACCTGATCAAAGAGGAGGCGGCTTCTCGAGACGGCCCGATGATCGTGCACGATGAGCACGGGGGCGTCACGGCCGGCACCTTCTGCGCTCTGACCACGCTGGTGCACCAGCTGGAGGCGGAGAACTCCATCGATGTCTACCAGGTGGCCAAGATGATCAACCTCATGAGGCCAGGGGTTTTCACTGATATCGATCAATACCAGTTCCTGTACAAATCTATTCTTAGTCTCGTGAGCACGAGGGAGGACGAGAACACGATACTGTCGGCGGATAACGGTGCCGTTCTGGGCGACGCCAACAACACAGCGGAGAGCTTAGAGTCCTTAGTGTAATGGCGGCCGCTTTCTAGTGACGATCCCGCATCTGTTCAATCTACTTCTCTTTATACTGGCATTTTGGAAAGAAATTGTTCTGCCTTTTTTTGTGAATCCCTTTATTTACCATCTTTAAATGAAACGACACAGTTGCTGGACATATGATCAAGTGATGTGTGCCTTGATATACTTCTTGTTGTCATTCTAATTGATTTTATACTGCTCAGACTAATTCCGATgctatttgtgtttgtaaaaaaaaaaaaaaaaaaatgcagtcatGCTGTTTTAGGGTAGGCGCTCTTCTCGTAATTTGATCTAACTGCGTATTCTAATCTTTCGTATTTATTGACAGTGAGCTAAATGTAAAGGgataagagaaaataatttttaatgacatatttAATTAGTATATTTTTTGTAGACGCCATGGATTTTCAACtgaattttgttttccatatagatgtaaataaaaaataaaaaaaacatacttagTAATGTTAACTGTGTGGAGTCAGAATTAATTAGGAACTCAATACTATTCTAATATGTAAATAGCATAATAGTGACCAAACCTATGGACCAAATTTCTATTTATACTTctagatttttatattttactacaGAGTCAGTTTTCTAGTCATTTTGAAAGGTATGACTGCATTTTGTGCTAATAATTTAGTTTGAAGGTTGTTAAtcgttttttaatatttctgatATTCCAGTGttcttgtattttgttatattaaCTTACATTTTAAGCATGGAATATTAACAGTTTTAATTGTACACTAGAGGTGTTTTGTTAGCGCTAGAGGTAGAAGTTGTAGGAATGTATGGATCATCTGTACAACCTGTGGTGAttttcctttcatgttttttgcatCATGGTAAACCTACAATAAATATGGgcatttaatttca

Function

GO: NA

KEGG:

id description
K08114 PTPRZ; receptor-type tyrosine-protein phosphatase zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137574 lncRNA downstream 2977 5345683 ~ 5347227 (-) True G109875
TU137499 lncRNA downstream 213460 5136518 ~ 5136744 (-) True G109815
TU137461 lncRNA downstream 329529 5020037 ~ 5020675 (-) True G109782
TU137457 lncRNA downstream 379016 4970864 ~ 4971188 (-) True G109778
TU137436 lncRNA downstream 602970 4746970 ~ 4747234 (-) True G109761
TU137582 lncRNA upstream 19072 5409340 ~ 5409571 (-) True G109878
TU137623 lncRNA upstream 44669 5434937 ~ 5435764 (-) True G109916
TU137664 lncRNA upstream 187202 5577470 ~ 5580727 (-) False AMCG00006476
TU137732 lncRNA upstream 412304 5802572 ~ 5803261 (-) True G109995
TU137733 lncRNA upstream 413230 5803498 ~ 5804452 (-) True G109996
AMCG00006462 mRNA downstream 226576 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006463 mRNA downstream 236114 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006456 mRNA downstream 282464 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006457 mRNA downstream 299013 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006447 mRNA downstream 857674 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006471 mRNA upstream 46275 5436543 ~ 5483801 (-) True AMCG00006471
AMCG00006473 mRNA upstream 120321 5510589 ~ 5513330 (-) True AMCG00006473
AMCG00006474 mRNA upstream 128403 5518671 ~ 5534047 (-) True AMCG00006474
AMCG00006472 mRNA upstream 160549 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006476 mRNA upstream 190162 5580430 ~ 5603733 (-) True AMCG00006476
TU137277 other downstream 1184604 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3020213 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3219949 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3326061 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3468367 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 623836 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1395045 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1688121 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3332120 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3397550 8787818 ~ 8794062 (-) True G110520

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006258 True 4245 mRNA 0.53 30 NC_007122.7 4953964 ~ 5463254 (+)
grasscarp (Ctenopharyngodon idella) CI01000055_04132203_04169742.mRNA True 5583 mRNA 0.49 29 CI01000055 4132085 ~ 4169742 (-)