RNA id: AMCG00006474


Basic Information

Item Value
RNA id AMCG00006474
length 909
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00006474
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5518671 ~ 5534047 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTGTAAAACATATGGGAGTGGAGTGATCCGCACGTTCAATGATGATTTATTCTACCTGAAGTCCAACTGCATCTTTACCTTCATCAAGAAGGGCACTGACTTCCAAATCAAAATACAACGGGAAATGCGGGAAATGCTCAACACAGTGACCATCACGATCAACCAAATTGAAATCCAATTGGAAAATGGTGATATTCTGGTTGAAGGGGACAATTTCATGGAATGTCTTTTACTTGTAGATGTGTGTAAAACTTTTGGGAGTGGAGTGATCCACACGTTCAATGATGATTTATTCTACCTGAAGTCCAActgcatcttcatcttcatcaagAAGGGCACTGACTTCCAGATCAAAATGCAAGGGGAAATGCAGGAAATGCTGAACACAGTGACCATCACGATCAACCAAATTGAAATCCAGTTGGAAAATGGTGAAATTCTAGTTGAAGGGGACAAGGTTACTCTTCCATATGATCACACATACGTGCACATCTATACCTACGGCATATACACTCGCCTGAGGAGCAGGACACAGAAGTTATCTGTGGTTTGGAAAAATCTGGGGGATAAAATCAGCACACTTTGGGTTGAACTGGATCAGAGCCTCCGTGGGCAGACAGATGGTCTTTGTGGCATGTATGGCAGGGATGATGAAGTCACATGTCCTGGAAACCTGGTATTTAAGGAACTTGGCAATGCCTTTATGGAGACTTGTTCCAACCCTACCTTGCCACTTAATGTgccacaaacaaaaacttgtgTGTGTCAAGATACAAACGATGGACCTGCAGTCCTGAATGATTATCTGGGAGTGACCACGTGTGTGCCTCTGAATAAGTGTCCTTGCATGTTTGGTGGGAATCTCTATGATCCTGGTGCCAAACTGTTTAAACAGTGCCAAACATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137623 lncRNA downstream 82907 5434937 ~ 5435764 (-) True G109916
TU137582 lncRNA downstream 109100 5409340 ~ 5409571 (-) True G109878
TU137574 lncRNA downstream 171444 5345683 ~ 5347227 (-) True G109875
TU137499 lncRNA downstream 381927 5136518 ~ 5136744 (-) True G109815
TU137461 lncRNA downstream 497996 5020037 ~ 5020675 (-) True G109782
TU137664 lncRNA upstream 43423 5577470 ~ 5580727 (-) False AMCG00006476
TU137732 lncRNA upstream 268525 5802572 ~ 5803261 (-) True G109995
TU137733 lncRNA upstream 269451 5803498 ~ 5804452 (-) True G109996
TU137753 lncRNA upstream 319767 5853814 ~ 5855502 (-) True G110015
TU137917 lncRNA upstream 1286191 6820238 ~ 6820568 (-) True G110152
AMCG00006473 mRNA downstream 5341 5510589 ~ 5513330 (-) True AMCG00006473
AMCG00006471 mRNA downstream 34870 5436543 ~ 5483801 (-) True AMCG00006471
AMCG00006470 mRNA downstream 128403 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006462 mRNA downstream 395043 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006463 mRNA downstream 404581 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006472 mRNA upstream 16770 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006476 mRNA upstream 46383 5580430 ~ 5603733 (-) True AMCG00006476
AMCG00006477 mRNA upstream 119228 5653275 ~ 5657121 (-) True AMCG00006477
AMCG00006482 mRNA upstream 130928 5664975 ~ 5697656 (-) True AMCG00006482
AMCG00006481 mRNA upstream 238198 5772245 ~ 5783145 (-) True AMCG00006481
TU137277 other downstream 1353071 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3188680 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3388416 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3494528 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3636834 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 480057 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1251266 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1544342 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3188341 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3253771 8787818 ~ 8794062 (-) True G110520

Expression Profile