RNA id: TU137664


Basic Information

Item Value
RNA id TU137664
length 727
lncRNA type sense_over
GC content 0.35
exon number 3
gene id AMCG00006476
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5577470 ~ 5603733 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATCTGACTTTTACAGTctgtgtcattttttatttgaaaccgatttgttttttttaatctattgatACATTTGTTTCCGTATCTATTCATTTAAAGGGACAGAAGATTTGGGATGAGGCCGGCTGCTGCTTCACTTGCAATGACATGTGTGAGCCGAAGAAGTCCATTGTAAAACTACAAGATGGAAATTGCACAGCAGATGTAGAGATGACTGCATGTGAAGGCCAGTGCGAATCTACAGCTGTggtGGCACATTCTGAACAAGGCTTCAGTCTtcagaagaaatgcaaatgcTGTCAAGTACAGAAGACCGAACAGAGAGCTGTATCTTTGAAATGCAGCGATAATGTTTCCAAACAATATAAATACCAGTACACAACCAGCTGTACATGTTCTGTTTGTGGTGGGGACGAATAACAACATTCCTCTATCTGTCCATGTGATTTACATTACTGCATGAGCATCGATtgctttgtttcagtttcaaattaaaacaaatctactcATGTTTATGTACCTGAGAATAGTTAACAtactggaaacaaatatattgaaaaagatTAATCACGGCTAATTTGAAACCAACTGTGTTAAAGAAAAAGCCTCTTATATTTCACTATCTTATCTTTTGATATAATACATCTCTCCTGGGCATACTCTTTTTATGATTAAATGGTTTGAATGTCTTTCCTTAaccaataagtaaataaaatgttctttgcAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137623 lncRNA downstream 141706 5434937 ~ 5435764 (-) True G109916
TU137582 lncRNA downstream 167899 5409340 ~ 5409571 (-) True G109878
TU137574 lncRNA downstream 230243 5345683 ~ 5347227 (-) True G109875
TU137499 lncRNA downstream 440726 5136518 ~ 5136744 (-) True G109815
TU137461 lncRNA downstream 556795 5020037 ~ 5020675 (-) True G109782
TU137732 lncRNA upstream 221845 5802572 ~ 5803261 (-) True G109995
TU137733 lncRNA upstream 222771 5803498 ~ 5804452 (-) True G109996
TU137753 lncRNA upstream 273087 5853814 ~ 5855502 (-) True G110015
TU137917 lncRNA upstream 1239511 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 1331149 6911876 ~ 6912252 (-) True G110165
AMCG00006472 mRNA downstream 25613 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006474 mRNA downstream 43423 5518671 ~ 5534047 (-) True AMCG00006474
AMCG00006473 mRNA downstream 64140 5510589 ~ 5513330 (-) True AMCG00006473
AMCG00006471 mRNA downstream 93669 5436543 ~ 5483801 (-) True AMCG00006471
AMCG00006470 mRNA downstream 187202 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006477 mRNA upstream 72548 5653275 ~ 5657121 (-) True AMCG00006477
AMCG00006482 mRNA upstream 84248 5664975 ~ 5697656 (-) True AMCG00006482
AMCG00006481 mRNA upstream 191518 5772245 ~ 5783145 (-) True AMCG00006481
AMCG00006486 mRNA upstream 398400 5979127 ~ 5984291 (-) True AMCG00006486
AMCG00006492 mRNA upstream 405923 5986650 ~ 5991143 (-) True AMCG00006492
TU137277 other downstream 1411870 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3247479 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3447215 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3553327 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3695633 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 433377 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1204586 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1497662 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3141661 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3207091 8787818 ~ 8794062 (-) True G110520

Expression Profile