RNA id: AMCG00006478



Basic Information


Item Value
RNA id AMCG00006478
length 585
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00006478
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5593752 ~ 5596707 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCGTCAGTGACCAATGTGCTGGAGTTTGGGAACAGCTGGAAAACACCTGGCGCGCGCTGCTCAGACACTGTGAACCAGATTTTCCCGTGCGAGAAGTACTCATACTGCTCCACATGGGCAGTCAGGAGGTGCCAGATTATTCTAAGCCCAACATTTGAATCATGTCACGCAAAGGTGGAAGTGAGTCCCTATTACGATGCCTGCGTAGAAGAATCGTGCTCGTGTGAAATGGAAGGCAGATTCCTTGGCTTTTGCACAGCTGTGGCTGCGTACGCCGAAGCCTGCAGTGAGAAGGGAGTTTGTATCAAATGGCGGACCCCCGACTTGTGCCCTGTGTACTGTGACTATTACAATGAACAAGACAAGTGCAGCTGGCACTATGACCCCTGTGGGAGTATCCAGACATGTGGCCGGAACAACAAGTTCTCTGGAAAGCTTGAAGGTTGCTATCCAAGATGTCCTACAGAAACTCCATATTTTGATGAGAACTCTGGCAAATGTTCTGCTTTGGGAAACTGCAGCTGTTTATATAACGAATTAGTACTGAAAGCTGGTGACAGTTTATCTATCTGTGGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137646 lncRNA upstream 47316 5546207 ~ 5546436 (+) True G109933
TU137535 lncRNA upstream 240582 5352456 ~ 5353170 (+) True G109837
TU137473 lncRNA upstream 486804 5098996 ~ 5106948 (+) False AMCG00006460
TU137465 lncRNA upstream 549119 5044416 ~ 5044633 (+) True G109786
TU137459 lncRNA upstream 571574 5021296 ~ 5022178 (+) True G109780
TU137710 lncRNA downstream 202893 5799600 ~ 5804559 (+) True G109978
TU137770 lncRNA downstream 387083 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA downstream 387249 5983956 ~ 5984250 (+) False G110024
TU137834 lncRNA downstream 621824 6218531 ~ 6220086 (+) True G110081
TU137910 lncRNA downstream 1199042 6795749 ~ 6795994 (+) True G110147
AMCG00006475 mRNA upstream 102583 5490882 ~ 5491169 (+) True AMCG00006475
AMCG00006469 mRNA upstream 160116 5427730 ~ 5433636 (+) True AMCG00006469
AMCG00006465 mRNA upstream 247760 5322363 ~ 5345992 (+) True AMCG00006465
AMCG00006466 mRNA upstream 282336 5308497 ~ 5311416 (+) True AMCG00006466
AMCG00006467 mRNA upstream 292376 5243778 ~ 5301376 (+) True AMCG00006467
AMCG00006480 mRNA downstream 102910 5699617 ~ 5724043 (+) True AMCG00006480
AMCG00006479 mRNA downstream 166647 5763354 ~ 5769646 (+) True AMCG00006479
AMCG00006484 mRNA downstream 187030 5783737 ~ 5798307 (+) True AMCG00006484
AMCG00006485 mRNA downstream 212237 5808944 ~ 5854451 (+) True AMCG00006485
AMCG00006483 mRNA downstream 322223 5918930 ~ 5958050 (+) True AMCG00006483
TU137492 other upstream 464923 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 495054 5080881 ~ 5098698 (+) True G109795
TU137475 other upstream 495054 5080881 ~ 5098698 (+) False G109795
TU137460 other upstream 567846 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 1066014 4524806 ~ 4527738 (+) True AMCG00006445
TU137762 other downstream 382355 5979062 ~ 5982909 (+) True G110023
TU137766 other downstream 384489 5981196 ~ 5982909 (+) False G110023
TU137861 other downstream 923158 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 1315169 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 2056965 7653672 ~ 7655194 (+) True G110279

Expression Profile