RNA id: AMCG00006481


Basic Information

Item Value
RNA id AMCG00006481
length 3812
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00006481
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5772245 ~ 5783145 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAGCTTTGAGGTCGAGATTAATTTTCTTATTTGCAATTGAACCGGGGTGGCATGCATTATTGTAAAAATGTGATAATTCATCCTTTCCcagtctttttattatataatccTTAACTTCAGCATTATTTATATGGGGTGAATATATCAGGCAGCAacacttgtttgtttaatgcaaTGATTGCAAAACATACAGGGAATATGCACAAGTGAACTAATTAAAACGTAATCTAATTGGCCTCAGCtcggttttattttaatgtgtccatttgttttctgtgtaaaataaacgAGTGAAACGAGTCACGCGCGCTCGAGGAGGCCAGCGCGCGCTGGTTAATATCCCGTAAATAAATCTCTTAAAACTCACAGCTGTGTTTTATCCGTTTAAATGGACACATATTGACTTTCCATttaggtattattattactgttttatcTTCGCACTCTTCGTGTATTTTTATCACCGACTTActggaaatcaaatcaaacgGTCCTGCGTCGCCGTGTCTGAGGCGGGATGAACTGGGTCGGGGGCTGCAGGAACAGAGCCATGTTCAAAAATGACGTACGGAAACAGAAGGAATTTTTTGAAAAGAAGAAactgcaaaagaaaatgaagcttTTAGGAGTGCTAAAGTCTCCTCAGAAGGACAATGCTGGCAGCATGGACTTGCTCACGATGTTCGTTGTGAACCAGATTTCTTCAAAGAAGGAGAACAGCAGTGTACCGATGAAATTGACCCATGTTGGCAAATTCAAGGGAGCTCAACCGACTGTAAGACGAGACATACAGCTACCGATGTCCCCCGGACCGCCCTCCAGATTGTGTCTTGAGGAGAGTCAGCCGCAGTACAGTGTCCAGAACTTCGGTTTGGGTAGAAAGAAAAAGAGCTACTCAAAATATGACAGTCTGAAATACAGCCAGTTATCTCCAGTGCTGGAGTCCAATTTTTCCGACTGCAGTAATATAGATTACCAGCACTGTGTGCCCAATGGCCTCAGTCCCCTGTTTTCATCAGTGAGGTATCCTATCACAGAGAAGGGTCACTCCCCTCCGTGGGGAGTAGCCTCCGATGACACGAACCAGCCTCAGCAGTGTGATTACAGCTTCTCCAAAGACAACGAGGAGGAAGACAACCGCAGCTTTGGAGCTTTTGAAGATGCACAAACATATGCCAGTCAAGCATCCCGTCACTCTTCATTGGGCTATGAATCTCCAAACTACTCCCCAAAGGAAGCCTCTCTCTGTACGGAGGATTCAGAGGAAGATTATAAAGGCGTGTGTGGAGATGGACCTTGTGTAGATAGATTTAACAAAGAACCCGTTTCAACAAGGCCCGGACCTGCAACAGCCCTGCCATTGACTGTCACTGAGGTAACCATTATCTCAAATGCTAATAAAGCAACTGACCTTCATATGAGTGAGAAAAACCCAGGCAGAAGAACCAGGAAGGATGTGGACCGAGACCAGTCTGTGCCGTCACATGTGCAGTCCAGGCTACAGGGTCCAAATGGCGCTAAAAGAACCAAGAATGTGACAACATGCCACAGCAGGGACGTTGGGACACAGACTGACAGTATCCTTAAGTTCCAGAAATCAGACACTGCAACCCAGTGCAATCTTGGGAAAAAGGATCCAGCTGAATTGAATCGCATTCTTGAGAAACGTAAAGTGACCAACAGGGGGCAGACAAGTCATAAGAATGCCATAGCAGAGCCCAGTTCAGCTACAGCTATGCCAGGCATCTGTGTAGAAACAGGTTATTTGTCCTTGAGTAAATTCACTACAAGGCACCAGAACAAAAACGACCAAACAAGTCCAAGAGAGCGCTCAAGAGTTTCGGATAAAATACCTGACAGCTCACTAAACATGGTGACTGCAAATCCCAAGAGCAGCCACACACGGGACTCCCAAAACATGAGACCACTGTATGGAAACGACAGACGAAGGAACCTGTCCAGTGGGGAAGATCTACCAAAAGGTCTGAGACAAGATCCCATTATAGAAAACTATGGGGGTGTAGCAGGACGAAACGCACACACTTTATACAGTGAACACCTGACCGAAGATCGTGTGCCTGTGAATATGGATGGAAAACGGGGTACAGATCTGACACCTGAAATCAAGGTGAAAAGGAGCTCTGAAGAGACAAAGACCCTTCATGAAATAGCAGACATTTTGCTAATGTTAGGACATAAGAGTAAATTTCAGTAAGATAATGTTTTTCCAGTGTCCATAGTTCTTGAGTATAACTTCAAAATACTCAAAACCACCACCGGAACATGAGGAATCCACTCGCCGTATCTTCCACTCTCATTAAAATCACACCAAGCATTGCTAGATAATTATCTGGTTTATTTTGtccatttacatatttaatgaatatatgCAGTTTTATATAAAGATAGACTCTAATAAAACATATAGCAACAATTACCAAATTAGCTACAGCACTAATTAGTTTTTCTCACTAATATTTCATAAACTGTATAAacactttgtatttttcaattacaattgTTTCACATAGGAAAATTGCACCTGTCCACTATAAATAAAACTTCAGATGCCCTGATTGGTgaataaagcaaagcaaagaaaaaagaaatgtgggTTGCCAAGGCCTTCTAATGATGAAAGTTTCCATTAATTAGCCAAGTATTAAAgctgttattgttttgaatttaaataaaatttatCTTCAAGATCTAGTACCtcaatttgtatttgctgtttCATATAAGTGCATAAGTTATTACAGTCatattttgtgcatttaaaataacttccgATATCTTCCCTGTTCAATGCGAATCAATTCCAATACCATCAATGCAGAGCCATCTGGGTTGATACTACAATTAATATACatctttattaaattttttctgcaataaaaaaaaagctacaatCATCTGATATTAATAATCTGTCCAGCGTTCTGCAGCTTGGCAACCCAAACCAAAACATCCctcatgaaatgcatttcaggaaGCTTGGACATACACTTCATGAACATGTAGTGAATCCCCCTATAACCAAGCCTGCATTAACAGCACGAAATGAAATTTACAACATGTTGCAAGATCATCTGACAGCTTCTGCGATTGCCCAGTCTCCACAGCGATGTACAGAACACAGAAACCTTGAGACAGAAAGTGTAAGAGAGCAGGCCTGGGTAAACACCAACAGATCATTTGCCACAAAACAGCATAGTAACTTTACTAATAGCAGTTATGTTAAAGTAATGTTTTCACCATTGAACAAACTTGATACTATGAGCAGTCGTTTTCGGTAGTGACAGATATGCACATCACTTATTTCTCAGTCGACAGCCTCCCAGAGAGTCGGCTGGACTCGACACTATGGAAAACCAACTACAGGTTGGTGTTTACCTTTACAGTACGATACCACCTAATACAGCATTTGCATTTCATCACCGCGTATTAAAACGTAACATTTTCAACATACATTACTGTTAACATTGATAACACACTGATCCCACTCTGCCACGTTACGGATAGATATGCAATTTATTTGTACACAAGGCTACAGAGGAAGACGGAACAAATTGTTCCAAGAAACATACAACTATCCttctatttgaaataaaaaaaacaacaagtatGCAATTTCATATGCAACAACAGTGTGTAATCTGTAAACATTGTacctgcaattaaaaataaaacacaataaaatatgttgtttacAAAAATATCCTCTGCTTCTGGTCTGGAGAATAATTGTCCTGGTTATTCACACATCCTCTTGGTTTGGTACAATTACGCAAACATTAgaactggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137664 lncRNA downstream 191518 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 336481 5434937 ~ 5435764 (-) True G109916
TU137582 lncRNA downstream 362674 5409340 ~ 5409571 (-) True G109878
TU137574 lncRNA downstream 425018 5345683 ~ 5347227 (-) True G109875
TU137499 lncRNA downstream 635501 5136518 ~ 5136744 (-) True G109815
TU137732 lncRNA upstream 19427 5802572 ~ 5803261 (-) True G109995
TU137733 lncRNA upstream 20353 5803498 ~ 5804452 (-) True G109996
TU137753 lncRNA upstream 70669 5853814 ~ 5855502 (-) True G110015
TU137917 lncRNA upstream 1037093 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 1128731 6911876 ~ 6912252 (-) True G110165
AMCG00006482 mRNA downstream 74589 5664975 ~ 5697656 (-) True AMCG00006482
AMCG00006477 mRNA downstream 115124 5653275 ~ 5657121 (-) True AMCG00006477
AMCG00006476 mRNA downstream 168512 5580430 ~ 5603733 (-) True AMCG00006476
AMCG00006472 mRNA downstream 220388 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006474 mRNA downstream 238198 5518671 ~ 5534047 (-) True AMCG00006474
AMCG00006486 mRNA upstream 195982 5979127 ~ 5984291 (-) True AMCG00006486
AMCG00006492 mRNA upstream 203505 5986650 ~ 5991143 (-) True AMCG00006492
AMCG00006490 mRNA upstream 211669 5994814 ~ 6001150 (-) True AMCG00006490
AMCG00006491 mRNA upstream 233489 6016634 ~ 6042924 (-) True AMCG00006491
AMCG00006493 mRNA upstream 268182 6051327 ~ 6067994 (-) True AMCG00006493
TU137277 other downstream 1606645 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3442254 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3641990 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3748102 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3890408 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 230959 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1002168 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1295244 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 2939243 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3004673 8787818 ~ 8794062 (-) True G110520

Expression Profile