RNA id: AMCG00006482


Basic Information

Item Value
RNA id AMCG00006482
length 9001
RNA type mRNA
GC content 0.48
exon number 51
gene id AMCG00006482
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5664975 ~ 5697656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaagcTAATAACAACACAATCGGAGTACAGGAGCAGTGTAGTGTTTGCTTCAGGTTTAATCAGATGTTAtttgaaaaaagtttaaattaggCTGTGTATTATGAAGGAAGTGACAATATGAAAGTGATCAGAGGAGCAGCAGCTACTTGAGCAATTGAAAAAAACGGACTAATTAACCTGCGCAGTCATGTGATCACCCCACCACGGGACGCAGTGGATTGATTTCGCCGCttctttaaatgtaacaatatcAATATAGGTAACAATAGCGCTATAAACTTACATGTCCGGAGAAGGAAAGTCCCTGAAACCGAAAGTGCCTTTTGCAAGAGAACTTCCTCCAATTAATGACACAAAACGGAATACGTCCAGGTGTTACATTATTTCCCCATTTGCCTGCGATGAACATACAGAAGTTAAGTTTGTCCGACACTGTGCGAGGGGATTTCAGAGCTCCGCGCAATGCCGCTTCATGCCAGCACAGTGATTGCttgtgtattacatttgtaGCATTGCTTTGTTGCTCGATGTTTTGTCGTTAGTATAGTTTTAAACCTATTTTCTTTGAGTTTGCTGAAATCATTGATGGGGCATGGCTGATAAGGAAGAACTGGAGAAAAggctaaacaaattaattgtgagattaaaacatgtagAGACTGGCAAACAGCTGGACACCGTCGTGCAAATCCTGGAGGATCTTCTCTCCCTGGCAAACGCGGATAATTACGCCGCAGAATTGTTTGAAGGCAAAGACGTCCATCTGTCATTAATGGTGGTCTTGGATGTCTACCTTGGATGCAGTGCTCTACAGCAGGTGGGATGGTCCTTACTTTGCAGActgctggaattgtgtcctgcGACTCTGGAGATGTTAGTTTCTCCACATGTTGAAAATGACTGGATTGCACTGGGAATACACCAGCAGATTCTGAAAATGCTGTCTTTACACAATGGAGACGATAATAAAGATGACAAGGTGATGATGGTTGGACTCAGGGCTTTATCGTATCTTCTAGAGTCAGatgCAATTTTGTTGATGATCTTGGATGAAAAAAatgatgttttctgtttgattgttgATGCAATGTCAGACTTTGCTTCAGATGAAGAAATCCAGATATACGGGTGTAAATCTTTGCAACTGCTTCTTGAAAAAGTTCCAGATGTGCACTTAATTGAATTTGTGGAAGGCAATGATCACAAGGCAATTCTGAGGGCAGCAAGGCAGTTTCAAGACAACCAGCACACTGTTCTGCAAGCACTGAGGGCCCTGCTGCCTTTGGCTGCCCCGGCCAGCAATGTCGAGGTTCTCATGTCAGGAAATGAAAGATGTTATGAACTGATAATGCGAGCGATGCAGTCCTTTCCGAATAATGAAAAACTGCAAGAAGTCGGCTGCTGCCTGTTTCAGAAATTTACATCGGAGAGTTATTACACCATTCTTGTATTAAATGGAGTGCCTAAAGTCATCGTGAAAGCTGCAGTGATGTATCCCGAAAACACCAGCCTGCAAACTTCGGCACTCTCCGTCTTGGCCATCCTCACGGAAACCATAGTTTTGAACAGGGATCTGGATGAGTGGACAGAGGAGGATGATGTTCGCTGGATAGACACGTGCTGCCGAGCTTTAGAGCTACACAGACGCAGCGCCGAGGTCCAGgaaGCAGCCTGCTGGGCACTGAATAACCTCCTCGTATATGACAGCCAACTTCATGAAATGTTCGGTGAAGAAGAAGGGAGATACCCAGTGCACAGACAGGTCATGGCTGCGATGCTTTTGCATTCTTCCTCTCTGGGGGTGTTCCAAGCCACTGCCAACATGTTGGCAACATTGGTAGATCGCAAAGGTAAAGTGAGATCGCTGTTAATGTTGAATGGGATACACATTAATATCCTGCAGATGATGAAGAAACACTCGGTCTCTCCCGATGTGGCTGAAAGTGCCTGTAAACTGCTTTACAAACTGTTCCAGGGAAGGATGCCAGATCTTGATGTGGGGACCACGGCGATGGGTGAGATATTAAGCGCCATGAAAACCCATCACTGCGTGCTTTCCATTCAGCTGGAGGCACTGCGAGCCAGCATGGTGTTAATTAACCCGGACAGGAGATTGACCGAGCACGGGACCTCAATCGGTGACCCCGACACCGTGGATGTCACCCTGAAGGTCCTTAAAAACCAGTGTGTGTTGGAGGGGGCTCACACTGTGTTCCTCAATGCGTTGAACAAGTTCATCTGGAATTTGGCCGTTCAGGAATGTGGCTTCAAAGTCCTCTCTGCGCTCTCAGACTGCTCCGGTGCATTGGATCTAATGTATCGGCAGGGGGCCATAGACACCGtgctacacacactgcagatgTACCCCGAAGAAAAAGAAATCCACTTCTGGGGCCTAGATCTGCTGCAGAGTCTTCTTTCTAAAGACAGGTTGTCCTTAGCTACAGTCCCCATTATGGCCTCGGTTCTTGTCAGGTCTTTACAGCGATACAAAGAGGATTTAGAGATACAGTTAAAGGGACTCAAGGCTGCTTGGAAACTGCTTGATTTATCTCCAATTGCAGCTGAAGAGCTGGAGAAACAATCACTTGACAGAGTTATTTCCCAACTGATGAACATGTCTACTGAAAGGAATGCTTCAGTGCAGAAGATGTGTTGCTTGTGTTTCTCAAAAATGGCCCACAATGTTGATCTTAAATACAGCATGCTTGAGAAGGCCTGTGCTGAATATGATGTAGTCATGGCCGAGTGCCTCATTCACCTGGGGGCTGATGTCAATAAGAAAACCAAGAAGGAATCTCTGATCTACCAGGTATGTGAACAGAAAACTGACCCGGAGCTGCTGGAGTTACTGTTATACAGTGCGACTCACGAGCAGCAAATGCGAAAAGCCCTAAGCGTCGCTATTAGGAAGCGGGACGGCCCTGTCATTAGTTTGTTGCTGAGGAAACTGGGACTGGATCTGACAAACAACGCCATCTGCCTGGGAGGATTTCGACTTGGGCACATCGAGGACTCCTGGTTAATACCGCTGTTTTCCGAGCGCAGAATGaatatttttctgaaaagtACCAGCAAAGGCTCCTCATTGGCCAGAGAGATCCTGAAATATCAGAAAAGACAGGCTGCTTTAGAGTCACAGAAATCCCTCTCTGATGCTTCATATCTGGGAGCCACTCTGGATGAACAGGAAGATGGTGGCTTTGTATCTCCTGATGAAAGTGGCATTTTTATGAATGACGACATGGACAGCGATGATGATGAAGAGATGCTGCAGAAGAAGAGGATATCCCAGTCTAGCTATTCGGGGGACTTGTCTGGAAGTTTTTTAATGCTGCCGAAAGTAAGACAACGGCATCCCAGCTCTGAGGGAGGAAGTGGCGATTCTGAGCCAAATGAGGGACCGCATCAGAGGCTGGTCAGGACAACATCCAGAAAGAAGGGTAGTTTTTCTTTGAGTCTAACATCAGTGGATAGTTCGTCCTCGCTGATCTTAGACAAGGACTGCATTAAGTTACTTGACCTCTCTGGGAATGAACTGGACAGTCTAAATTTTCTGACTGCAAACAGCACCTTGACTCCATTCCTGGAGCATATTGTGAGACTGGAGCTGAATCAAAACAACCTGTCAGAATTTGCAGCAAGTCTGTGTGAAACCCTAAAGAGTGTGACTCATCTGGATCTCCACAGCAATAAGTTCCAGTCCCTTCCAGATGGCATCCTGGGAATGCCCTGTCTTAGTCTCCTCAACATCTCCCAGAATGCCATTGGCCCATGTCTGGTTCTGAATCCTAATGCCCGCTGCCCGACTCTGAGACAGTTTATTCTGTCCAGTAATCAGCTATCATCTTTTCCCGATCAGCTGGGGCTGGCTGTGGATAAATTGGAGGAACTCCACCTGGACGGGAATAAAATCTCTGAAATTGACTCTCCACTCGCCTTGTCTGAGTTGAGGCACCTGGACATCAGCAAGAACAGCATTGTGAAAATCGTGGATGTATTTCTGGCTGACTGCCTCAAGTTAGAGTCTTTCAATGCTTCAGTGAACCAGCTGAGTCTTTTACCCGATCTTCcagcaaaaataacaacattaaagCTCTCTCACAATGAATTCACCTGCATTCCAGACGCTATTCTTCATCTTCCATATCTGCGATCCATTGACATGAGGAACAATCACCTCACGGTCCTGCCTGGGCCCTCGAACTGGGAGTCCACTAACTTAAGAGAGCTCATATTCAGCAACAACCTCATCAATGTGCTGAACCTGACTGGACCCATCTACAAATGGGCCAGACTGGAAAAACTGCATCTGTGCAATAATAAACTGGAGGAGATACCTCCTCAGATCGGGCTGCTTGAAGACCTGACCTCACTAGATATCAGCAAAAACAGCGGCCTGAGGAGCTTCCCAAATGAAATGGGGAAACTGGAGCGCTTGTGGGACCTGCCTCTGGACGGTCTTCAGCTGGACCTGGATCTGAAGCACATCGGCAGCAAGACAAAGGACATCATCAGATTTCTCCAGCAACGGCTGAAGAAAGCTGCCCCCTACTATCGCATGAAACTGATGGTAGTGGGGAATTCTGGGAGCGGTAAAACTTCACTCGCCAACCAGCTCATGAAACTGAAGCGCTCGCAGTGTCACCCTGATCCGACTCCCCTCGGGATTGACGTCAAGGACTGGACCCTCcgtgaaaaagggaaaaagaacattgttttaaatgtctggGACTTTTCAGGGAGGGAGGAGTTCTGTGGTTCACACCCTCACTTCATGACTCCAAGGGCCTTGTATCTGGTGGTTTATGACCTGAGCAAAGGACCAACAGAAATTGATGCTATTAAACCCTGGCTGTTCAACATCAAGgcccAGGCGTCTTCGTCCCCTGTGATTCTGGTGGGCACCCACACAGACGTCAGTGAGGACAGGCATGTTCAGGCCTGCATAGCTAAAATCAGGAATGAGCTGCTGAACCACCAGGGCTTCCCCATCATCAGGGATTACCACATGCTCACGGCCACCGAAGACTCGGACGACATGGGCCGCCTGCGCAAAGCCATTGTTAAAGAGGTCATGAGCTTTAAGATTCAAGACCAGCCAGTCATGGGTCAGCTGATCCCTGACAGCTACCTGGAGCTGGAGAAGAGGGTGCTGCAGGTGCGCGAGTGGGTGCCCGTCGAGTTCCCAGTCATTCAGCACCAGAGTTTACTGGAGATCATTCAGGAGAACCAGCTCCATCTGGATGAAAGCGAGCTTCCCCATGCCATCCACTTCCTCAGCGAGTCTGGTGTTCTCCTACACTTCGATGATCCTGCCCTTCAGCTGAGGGACCTGTATTTTGTTGACCCTCAATGGCTTTGCAACATAATCTCCCAGATACTGACGTTGAATGGAGGAGGTTCATCAAAAACTCCTAAAGGTATTGTTCAGCGTTCAGTGGTGGAAACATTTCTTCTCAAAAAACAGAGCTTCCCCAAAAATTACATCACTCAGTACTTCAAGCTCCTGGAGAAGTTTCAGATCGCATTGCCTTTCGGAGAAGACCAGCTTCTTATTCCCAGCAGTTTGTCCGATCATCGGCCAGTGATCGAACTCCCCCACTGTGAAAATTCAGAGATTATAGTGAGGCTTTATGAAATGCCTTACTTCCCCATGGGCCTGTGGTCCAGGCTGATCAATCGTCTTCTCGAAGTATCAATGTATATGCTTTCCGGAAGAGAGAGAGCTCTGCGTCCTAATAGGATGTATTGGAGGAAAGGCATCTACCTCAACTGGTCCCCAGAGGCCTACTGCTTAGTGGAATCGGCCACCCTGGACACACCGGAGAGTTTTGTCAGAATCACGGTGCCGTGCTCCCACAAAGGCCGTGTTTTGTTGGGCCAGGTGGTGGATCACATAGACTCCCTGTTGGATGAGTGGTTCCCGGGCCTCCTTACAACCGACGTCCACGGCAAGGATTGTCTTTTAGTTAGCACTGTGGATCCACGGATGACAATCCCGATTTCCCAGATCGCTCCAGACCTGCTTCTGGCCGATCTGCCTGCAAACCTCATGCTGGACATCGACCAGTTAGAGATGGACCTTTCGTCTGAATATTTACTGGGGGACGGTGGATTTGGATCGGTCTATCGTGCAGTGTATAAGAATGAAGAAGTCGCAGTCAAGATATTTAACAAGCACTCATCAGAACTGCATCTGCACCGGCTGCTGAGACAGGAGCTGGCCGTGCTGTGTCACCTCCACCACCCCAGCCTCATCTCGCTGCTGGCAGCCGGGACTCAGCCGCGGATGATGGTCATGGAGCTGGCACCCAGGGGCTCCCTCGACTCTCTCTTTGAGCAGAAGAAAAATGGCTGCCTCAACAGGACCCTGCAGCACCGGATAGCGCTGCACGTGGCAGATGGCCTGAGATACCTTCATTCCTCCATGATCATTTACCGGGACTTGAAGCCTCACAATGTCCTCCTCTTTAATCTGAAGACCGACTCTGAGATCATCGCCAAAATTGCGGACTATGGCATCGCCCAGTACTGCTGCAGCATGGGAGTCAAGACTTCTGAGGGAACACCTGGGTTTCGTGCACCGGAAGTTGCCCGTGGAAATGTCATCTATAATCAGCAAGCAGATATCTTTTCCTTTGGCCTGTTGCTGTATGACCTTCTCACTAGCGGAGAACGTATCTTGGACGGGATGAAGTTTCCCAGTGAATTTGACGAGATAGCCGTGCAAGGGAAATTGCCAGATCCAGTAAAACACTACAAATGTGAGCCATGGCCCGGGTTTGAGAGGCTGATGAAAGATTGCATGAAGGAGAATCCCGAGGACCGACCCACTTCTTCACAGGTTTTTGACAGGCTGAACTCGGGGGAGCTACTCTGTCTGATGAGAGACATCTCGGTGGCTGAGGTTGTTGGTGCTGATTGCTTTGCGCTCTCCAGTCCGAGCTGTCAGCCCAAGGTCTGGGTTGGCAGTGGAAGCAGCAGCAAGAAAAAAGGCCGTATTACATGTATGGACTTAGAGACGGGGAAACATTCCACTCAGGAGGTTGACAGCAGCCCAGTGTTGTGTGTTACGATGGTGCGTCTCCCAGGAGAACAGGACGAGTGGATAGTGGCTGGAACACAGTCTGGGAGGCTGATCGTCATTAGCATGGATGATACGGCATCTAAACACCGGCTACAAGACGTGACCGACTCAGTCACCTCATTGTTCTTCCACTCTTACCCCAAACACAGcaAAGAGCAGAATTTCCTCTTAGTGGGCACTGCAGATGGTACCCTTGCAGTTTATGAGGACACCGTAATCAAGTGTGAAAATGGAAAGCCTTACAAGATTGTGCAGATTGGCAACATTAACACGCCCCTAGTGTGCCTGAGTGAGTCGACCTACTCCCAAGACAAGAGCACCATTTGGGCTGGCTGTGGGGCCAACGTTGTGTCGCTCACCTGTGATTATGACATCTGGAAGACCATAGACACCAAACCAAATTACCAGCTTCAGCAGAGATCTTGCAGTGAAGCAAACATAATACGAATGGCGGTTGATAAGTACATCTACTTAAACAAGAAGGACAGTCATGTGGTTGAAGTTTGGGACAAAAAGACTGAAAAGCTGAATGAATTTCTGGACTGTTCTCTCTTCTTGAAGCATGGATCTAATAAAAGAAGCAAGAGACCGTCTGCCGAGGACTTGCGTGCTGTGAGAGTGAAAGCGCTGCTCCTGCATCACAGTGGCACGCTATGGATTGGAACGACGGGAGGTCATGTGATCCTTGTTGACTTGTCCACTCGGCAGCCCATCCGAGTCATTGGCGTACGTGCATCTATTAGGAGCATGGCAGCAGTAAAACTGGAGAGTGAGTCTGTCTTGTACGTCTGGAACAGTCACCTTCCTCTCGAAGTGCAGAACTTGCAGAAACACTGTGAGATGAGACAGGAAATTGGAGAGAAAATGAGAATGTCCCCCTTTGATTGAAATCACAGaTCTGTATTGGAAGAAAGTCTATGAAGATGGAATTAACAGTTTTGTACATGAAGGGAAACTGCACCGTACACATGTTCAAGGCAGAAGTGTAGTTTTAGTAAGACAGTGGTGTCATTTGAAGCTATTTGTGTTGTATCAGGTTTTGttgttataaagaaaaaaaaatacccttaAATCAGACATTTGAATCTCAGTTACTAAAACACTGCATAAACAAATAGCTGTGTACTTCTGGGTGTACTTCAGAGTGTTGGCCTGTTTTCTTACGGACTTTCCTTCACCTCTCTCTGATATTGagctctcctctctgctcccAGGCCACGAGCCCCCCACATACGTCCCAAACCTCCCCCCACTCACCTGTCCTCTCCTTCATCCCATCCCTCCTTAACACCGCACTCCTCTCCAGGGGTGCCACCAAGGGTGGGCCTGGGGTGGCCCCCCTACAAACACTGTCAGGGCCCCCCCTGCTAGCATTAACGAAACAACATCTCCTCCCCCCGCTAGCGTGACTGAAACAGCCCGACCCCCCCAGCAGTAATGGTCTACAACCGCTGCTACTCCTCTCGGACCGTGTCCCCTCAACATTCGCGCTCTCCATTTCTACCTCGCCACTCGCTCCCGGGCCCTCTGCAGTCCTGCATTTGCACAGCTGCACCGTTCTCTGCTCTGCTTACACTCTTTTTATGGTCACTTCTCCTCCATGCCTACTCCACCCTTTAACAAATACCAGGGAAAGAACTCTTATTATATTTGCACTTGTTAACTAATTTTACCAGGATTTATGCtgattgtattttgaaattattgtatttactggactttataatgctttgaaaattaTCCTTGTGAAATGTTTGTCGCTGtgatttttactggagcaatctagctGCAGTACCTTGCTctagggtacaacagcagtgctgGGACTGAAGCCACAATCTTCCACTCCACTTCCACTTCCCTCACACCACATGACTGCCCCTATATTatgctattatatatatataaat

Function

GO: NA

KEGG:

id description
K08844 LRRK2; leucine-rich repeat kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137664 lncRNA downstream 84248 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 229211 5434937 ~ 5435764 (-) True G109916
TU137582 lncRNA downstream 255404 5409340 ~ 5409571 (-) True G109878
TU137574 lncRNA downstream 317748 5345683 ~ 5347227 (-) True G109875
TU137499 lncRNA downstream 528231 5136518 ~ 5136744 (-) True G109815
TU137732 lncRNA upstream 104916 5802572 ~ 5803261 (-) True G109995
TU137733 lncRNA upstream 105842 5803498 ~ 5804452 (-) True G109996
TU137753 lncRNA upstream 156158 5853814 ~ 5855502 (-) True G110015
TU137917 lncRNA upstream 1122582 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 1214220 6911876 ~ 6912252 (-) True G110165
AMCG00006477 mRNA downstream 7854 5653275 ~ 5657121 (-) True AMCG00006477
AMCG00006476 mRNA downstream 61242 5580430 ~ 5603733 (-) True AMCG00006476
AMCG00006472 mRNA downstream 113118 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006474 mRNA downstream 130928 5518671 ~ 5534047 (-) True AMCG00006474
AMCG00006473 mRNA downstream 151645 5510589 ~ 5513330 (-) True AMCG00006473
AMCG00006481 mRNA upstream 74589 5772245 ~ 5783145 (-) True AMCG00006481
AMCG00006486 mRNA upstream 281471 5979127 ~ 5984291 (-) True AMCG00006486
AMCG00006492 mRNA upstream 288994 5986650 ~ 5991143 (-) True AMCG00006492
AMCG00006490 mRNA upstream 297158 5994814 ~ 6001150 (-) True AMCG00006490
AMCG00006491 mRNA upstream 318978 6016634 ~ 6042924 (-) True AMCG00006491
TU137277 other downstream 1499375 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3334984 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3534720 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3640832 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3783138 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 316448 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1087657 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1380733 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3024732 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3090162 8787818 ~ 8794062 (-) True G110520

Expression Profile