RNA id: AMCG00006483


Basic Information

Item Value
RNA id AMCG00006483
length 4402
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00006483
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5918930 ~ 5958050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGAAACAGAGTGTGGTGCAGCCCCGGTGCCAGAGTCTTATCGCTGTGTATTTATGAGggGAATCCCTGGTAAAAAATGTGGCACCATCATCGTGAAAGCAGAAGAGCTGGGCAACTGCAGAGAGGTGGTAATGATGCAGTTTTGTGGAAATAAATTAGACAAGAAAGACTTCTTCGGGAAATCGGACCCCTTCCTGGTCTTCTACCGCAGCAACGAGGACGGAACGTTCACCATTTGCCACAAAACAGAAGTGGTGAAGAACACGTTAAACCCAGTGTGGCAGGCGTTCCGCATCCCAGTCCGAGCGCTCTGCAACGGGGACTTTGACAGaacCATTAAGGTGGAGGTGTACGACTGGGACAGAGACGGAAGCCATGATTTCATTGGAGAGTTTACTACAAGCTACAGAGAGCTGTCCCGAGGTCAATCGCAGTTTAATGTGTATGAGGTGCTAAATCCcaagaagaaaggaaagaagaaaaaatacctCAACTCTGGAACAGTGACGTTGCTGTCTTTCGCTGTCGATATTGAAGTTACCTTCCTGGACTACATAAAAGGCGGgacACAGATTAATTTCACAGTGGCGATTGATTTCACTGCTTCTAATGGTAACCCGGCCCAGCCCACCTCCCTCCACTACATGAACCCCTACCAGCTGAACGCCTACGCCATGGCGCTGAAGGCTGTGGGCGAGATCATCCAGGACTACGACAGTGACAAGATGTTTCCCGCGCTGGGATTCGGTGCCAAGCTGCCCCCGGATGGAAGAGTGTCTCACGAGTTTGCCTTGAATGGAAACCCTCAGAATCCCTACTGCAATGGCATCGAGGGGGTGATGGAGGCCTACTACCAGAGCCTGAAGTCTGTGCATCTCTACGGACCCACGAACTTCTCACCTGTGATCAACCACGTGGCCAGGTATGCGGCGTCGGTGAAAGACGGATCGCAGTATTTCATTTTGCTGATCATCACGGACGGCGTGATCTCAGACATGGCCCAGACGAAGGAGTCTATCGTGAATGCATCGATTCTGCCCATGTCAATTATAATCGTTGGAGTTGGACCAGCAGAGTTTGATGcGATGATCGAGCTGGATGGGGACGAAATCAGAATCTCATCAAGAGGACGATATGCAGAGAGAGACATTGTTCAGTTCGTCCCGTTCCGAGACTACATCGACCGGACGGGGAACCACATCCTGAGCATGGCCCGGCTGGCGAAGGACGTGCTGGCCGAGATCCCCGACCAGTTCCTGTCCTACATGAAGGCCCGGGGGATCAAGCCGTCCCCCGCGCCGCCTCCCTACACCCCCCCGGGACACCCTCTGCAGACCCAGATCTAAGGGGCGCGCCGGCACCACCCCGCAGCCCCTGGTCCTCCACTCCTCGGACCCACTCGGCGCTGCCCGGGCAGCTCTCCTATCTGCTTGCACTATGTAGTCCGGACGACAGAGAGCACTCAATTCGGGACGAGTCTTTGAAGGCATGTTTACTTCCATTTCAAGCATTCTTCTGGAAAAGACTGGGGGGGAAAGCTGTGGCGCAGTACGGACAGATGGCGTAGAGGACTGAGTCTTAAACGAATGCCTTGAAGACGAAGCAGCTGGCTGGCTCTGTCGCAGCCGCATCTCAGCTCAGAGAGAGACCGGCTGAGGCGAAGAGGGACAACCTTTTAGCTGGAAAGGGAGGAAACAAGGAAACAAGGAAAAGGTCTTAACATCTCTTTAACAGTCGTAACTATTCTTAATCCCATGACTGTTGTACATAACTATGGGAAtgcatttcctctctctcttaatGTTTACATGTTACTGATTTTTACAGTTGGATACTTTTATAACCATACTTTCAATATTAACTTTTGAATAATGATTCTTTTTGTGTGTTACCTTGCAGGTGAAAGTGATACTGAGAGTAAAACCATATCCCTTCTTTAgagtgtaattaaaatgaaaaggcacTGTTACCCAGATGTATGATGGGTAAATTGCCATGTTACAGCTTATGTTACAAAATTGCCTTGACATGAGAGTGACGACTCAACGCAGAACTCAATTAATAACTCAGTTGATCTTAGATGACAGTAATTCAGCCTTATATCTCTtctttgttgttaaaataatatcacaGTAGCtgctattaatattaattaaagcaattcTTCAAAAAGCATATTCTAAAACATCTCTTTCGTTTGCTTAAATGTATGGGTAACTAATTTGATATATCATCCGATAGAAACAATAGTCATTGTCATCAGAAGAATTGCTTTTAAAGTGATATAAATGAACAAGCCCTGCTTAACAGATGTCTCGGGAGAAACAAATCTATCCGCCTCACTTGTTTCAGATTAGTTTTAAGACATTTGACAATATGGTGTTGTGACAAGTGTGGGAGTGGTGATCTCATCAAACTATGCACAACTGGAAGCTCAACACGAGTCCCTCGAAATCAAAGGAAGAAGGCATGTTGATTTGGCGTCTTTACCGGGTCCCGACGATCGTGCTGCAAGGCCCACTGAGATGTTTGACTTGCTATTTATCGCTTTTgcactttgtgttgttttggctTCTGTTTGGCTGGATTTTGGTCCTCGGAAAACACAGAGTTTACATGTTCGGACATTTTACTTAATCGAAGTACATATCATAGTGTGTAGTACACATACAAAGTCCCTTCACTACTCGAAGAGACCTGTCTGTCTGACACCATCTGACCCCATAATCCTCTGGACACTTTGAGACACGACCACTTGAAAACATTGTCCTGTAACGACCACAAATTTGATGATTAAATGGAGTATTTATTAGACCGTTCCTAAACCGATATTGTGAATTGCCTTCACGCAGCTTTACCATATCCTacgtttttgtttatgttgttgtgaacatatgatcatcatcatctccACTGCTGGAGGCATTTCGATGTATAGCGTCTCTTTTCCAGCTCTTCCCATCCTTTTCTGTGATCTTCTTGGTCTTTTTCCATCTCtggggatccattctatagcttctcttgtccatctttggtctgttttcAGTTTCCTATATTGTAAAGCTGCTGTTCCTCTTTTAATAGATCAAAATCAAAGTTGCTCCCCCAGGAAATAATAGGGGTCAGCTGTCCGCACAGTCAACCGACCTCGAGAGTCAACGGCTTTTGCCAGCAAAGAGTAAATTAAGCAGTTCAGTAAGATGTGTCTGAAATGAGCACATATCAGAGCTTGTTTCCAAACCACGTATGAAAAGATACTGCAAAGTGTTTGGGTGGGGATTTACACATTGTGTTCTTACGCTGCCTTTACGCTTTTAGGCAATATAAATGTGCCAAAGTTGAATGTGTGTGTCCTGAGGATTAGGTCACATGGTCTCTATCTatgagtctctctctcacaagtgtgtttttttgtgaacGTATCTTGGTTAGATGAGAGATGTTTGCAGACACATTCTTTTTTCAAATGCCGACCACAAAAATGGCCGTGTCAGCaagccaaaacaaaattaaaatccaaatcggatattattcaaattaatgatATTATTCGCGCTCATTAATATCCCACACTGATCGAGTCGGCAGTTGCTTGGAAGCTGGCCGAATTACCACGGCATTAGAAAGACATTAAATGACCATCAAAGTGTTTATTGATGATACTTTTGTTACAGGAAAACTTACATGTGAAAATGCTGTTGCTCGGCAGGTATTttcatgaataaattaaatgacacaaaTAGCTAACTTGTAAATACGTTGAAGGCTCTAGTGCGCTCCACAGAAGGGGATATTGTTTTTCGAACTTTATTGCTTCGCTGGTATCACCTTGCCATGCCTACTAATGTGTGCATGTGGGAGCCAATCAGGTGAATGTGCCAGAAATTTTAATGCACAGCCATGTGACTTTTGTGCACATGAACTTTGTTTACTGAGATATCCAAATAATCCATAGTATGCTCGTCATATCTAATAGTGCGCACTATGTTTGCATGTACAGTTTTACAAGAAATGCACTAGTTTTCGTGAGTAGTGTGTCGAGatacaaggaaaaaataaaattagtacAAAATGGCCTTAAATTCTCACTGAATTCTTGGAAATGTGTAATGCCTTCAGATGTTTAAAgaaattgttatatattttgtgtcagtgttcaattgctttgtaatgtatttttttctttgcacaaCCTCATGGATGAAAATGCCAAGATATTGTATTTCTGTAGAAAAAAACATGCggaaaaaaaagtggtttatCAGAGGTTATACTTTTgagagcatgacaggatgtgAAAAGCACTGATTGTCGGGTTGGAAAGGCAAAGCAATCAGTGAtgaaaaatatttctgtatcaATCTAaatttttcaataaaaattcttactaaacacaca

Function

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137710 lncRNA upstream 114371 5799600 ~ 5804559 (+) True G109978
TU137646 lncRNA upstream 372494 5546207 ~ 5546436 (+) True G109933
TU137535 lncRNA upstream 565760 5352456 ~ 5353170 (+) True G109837
TU137473 lncRNA upstream 811982 5098996 ~ 5106948 (+) False AMCG00006460
TU137465 lncRNA upstream 874297 5044416 ~ 5044633 (+) True G109786
TU137770 lncRNA downstream 25740 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA downstream 25906 5983956 ~ 5984250 (+) False G110024
TU137834 lncRNA downstream 260481 6218531 ~ 6220086 (+) True G110081
TU137910 lncRNA downstream 837699 6795749 ~ 6795994 (+) True G110147
TU137927 lncRNA downstream 897830 6855880 ~ 6857998 (+) True G110161
AMCG00006485 mRNA upstream 64479 5808944 ~ 5854451 (+) True AMCG00006485
AMCG00006484 mRNA upstream 120623 5783737 ~ 5798307 (+) True AMCG00006484
AMCG00006479 mRNA upstream 149284 5763354 ~ 5769646 (+) True AMCG00006479
AMCG00006480 mRNA upstream 194887 5699617 ~ 5724043 (+) True AMCG00006480
AMCG00006478 mRNA upstream 322223 5593752 ~ 5596707 (+) True AMCG00006478
AMCG00006487 mRNA downstream 26423 5984473 ~ 5985996 (+) True AMCG00006487
AMCG00006488 mRNA downstream 31439 5989489 ~ 5996070 (+) True AMCG00006488
AMCG00006489 mRNA downstream 43071 6001121 ~ 6009470 (+) True AMCG00006489
AMCG00006495 mRNA downstream 150545 6108595 ~ 6128500 (+) True AMCG00006495
AMCG00006494 mRNA downstream 177457 6135507 ~ 6150798 (+) True AMCG00006494
TU137492 other upstream 790101 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 820232 5080881 ~ 5098698 (+) True G109795
TU137475 other upstream 820232 5080881 ~ 5098698 (+) False G109795
TU137460 other upstream 893024 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 1391192 4524806 ~ 4527738 (+) True AMCG00006445
TU137762 other downstream 21012 5979062 ~ 5982909 (+) True G110023
TU137766 other downstream 23146 5981196 ~ 5982909 (+) False G110023
TU137861 other downstream 561815 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 953826 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 1695622 7653672 ~ 7655194 (+) True G110279

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006232 True 2054 mRNA 0.52 20 NC_007122.7 3006124 ~ 3195882 (+)
grasscarp (Ctenopharyngodon idella) TU121491 True 2191 lncRNA 0.36 2 CI01000019 237489 ~ 240211 (+)