RNA id: AMCG00006486


Basic Information

Item Value
RNA id AMCG00006486
length 4211
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00006486
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5979127 ~ 5984291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGGAACGGTGGTTTCGCACTCGTGTTGCAGGGGAACATATTAAGAGCGCACACAGGATGCAGGTCAGTTCATGCACATCTGTTATTCCTGCGACATGTCAGTCTGTGTATagttgcaatgcaatgcaataagGTTTAGTTCAGGAAAAATAAGTTTTAGCACGTACAACCATGGAGAGGTTTGAGGGCTATGTTTTCTCCGCGGTCTGCAGCACGTATTTCCTGGTTTCTTGCATCCTGTTCTCACACATCACCCGGGAGCAGAGGGAGCCCTACATGGACGAGATATTTCACATCCCGCAGGCGCAGAGATACTGCCAGGGGAGGTTCAGCGAGtgGGATCCGATGATCACAACATTGCCCGGGTTGTACCTGGTGTCCGTGGGCATCATCAAGCCCTTGGTGTGGCTGGCTGGCTGGACCGGGAAGTCCAGCTCTGCCTCTCGTAGAGTGCTCTCGGCCCTGGCTCTCTCCTCCTTCCCGGTGCTGTACTTCTTCACATTCCTCTACTACACGGACGCCGGCTCCACCTTCTTCACTCTCTTCGCCTACCTGATGTGTCTCTACGGCAGCCACAAAGCCTCCGCGCTGCTGGGCGTCTGCGCCGTCATGTTCCGCCAGACCAACGTCATCTGGGTGGCCTTCTGCGCCGGCACGGTCATCGCCCAGAAGATGGACGAGAGCTGGAGAGCCGAGCAGACGAAGAAGAAGGATGACGGGTCTTCCGCGCCTCATCTGGGCTCCGTGGCCGGGATGACCAAGCTGGCGCGATTCCTGGTGGAATACTTATTGAGCCCCCAGCATGTCAAGGCGGTTGTATCTTCCATGTGGCCTTACATCACGGTGGTGCTCGGCTTTGTTGTGTTCGTGCTGCTGAACGGCGGGATAGTGGTGGGAGACCGGAGCAGCCACGAAGGCTGTTTGAACTTCCCACAGCTGTTTTACTTTCTCTCCTTCACGTTGGTGTTCTccattttccattcattttcctaCCAGAAGACGGTGAACTTCCTGCGTTGGCTGAGAAAGAACCCTGTGTTCTGCCTGTGTCTGACTGCTCTGGCCCTCTTCCTGGTTTGGAGGTTTTCCTTCGTGCACAAGTATCTGCTGGCAGACAACAGACACTATCCTTTCTACGTGTGGAAGAAGATCTTCCAGAAACACAGACTGGTGCCCTATTTGTTGGTGCCGGGCTACGTGTTCACAGCGTGGAGTTTCACAGACACGCTGAAGTCTAAATCGGTGTTCTGGAACCTGATGTTCTGCGTGTGTCTCGCGGCCGCCACCGTCCCTCAGAAGCTGCTGGAGTTTCGATATTTCATCCTGCCCTATTTGATTTACAGACTCAATATTCCCGTACCTTCTGCCGGCCGGCTTCTCCTGGAGTTGGGTTTGTACACGGCTGTGAACGCGGTGACTATTTACCTCTTTTTAAATAAGACTTTCCACTGGCCTGACAGCAGTGACGTGCAGAGATTCATGTGGTgaacatgattaaataaatggacgctcttatttttgtatacatgtatatcaaGGAGACTCTCATGCAAAGTTTGTTACAGCCCAAGCTGTATAAGATAAGAGGtggcatatatatttttcttaaaagtgAAATAGTTAAGTTTAAAGTAGCTTAATTAATGTGAGAATTGGATCGTTTGGTTAGAATCACAGATTGTCAATAACTTGAGACCTTGTCAATTTTCTgccctttcaaaatgttgcattttctgTGATATCTGTGTCTTGGAAGGTTCAATAAGTCCAGAAAACCTTTTACAGGtggtgtaaatatttgttattgattTGCACAGTTAACATATGGAGaacatttgatatttaaatcTTGCTCTTGTAAAGATAGAAACGGTAAATCAGTTTTTTgttaccaaaaatatatttgatgtatGCTAATTTTATTGCAGCTGGGAAATAAGACATTTTTACTGTAGTTGACTCAAAGCAGACTCttgatttttataatttattaacattaaattgAAGTGTGAGAGCCTTTTTCTATTTAAGTAATTGAAATGACTCGGGTGacattattttatggttttctgCCAGgcgttatttaaaaaaaactgtatagtTTCCTGGAGAGCTAGATCACCTAAATTAGCAGAATTAAAGCCCTTATCTTATTTGATATTATTTCTGCAGTTAATTATTACTGGGATGCAATTGTGCTACAGAAGTTGTGATTCCATTCTGCCACTTGGTGTCACTATAGCCCTGTAAATTCAATTAAGTTCGTTGAAAATATGagaagttttgttttcaaagtaaatCTAAATCtggatatttattattacaatctTACCTTTAGTCCTTTATGTATGTAATGCACCTTTCttccagtccagtcctgttTAGCGAGTGCCTCTGGTTTCCAATtctcttaattagttaattgagctcattattcacttaactgaacacatgatttatttgtcttttaatgaCTGGATCTGAAGGATTTTGCACATTAATTAGGTCAGTGCATACCATTGAATCAATAATCTATCAATCAAACTGCTCAACTGCAGCTTCTACCTTTCAACGAGCAACTAATTAAGACCTGGAAAGAACAGTCAATTTGGCTTCTTATCCTAATAATGACATCAAGCAAGTAATTAGGTCCTGAGGTGGAACAGAAAATCGGCCACCCCTGCAGCACTCGAGGACTGGAAGCACCCCCCCGTTAGAGCCTCCTCTGACAGCTCTGCTAACAGGCAGCCCTGTCAGTCAGCCAGCCGTTGATCGGTCTCCCTCTCGAACGGGGTCTCACCTCTTGGGAGACGGTGCTGCTCTCCTTCCTCACCCCCTCTGAGGCAAACACCTCTCCGTGCCCCTGGACCTGCAAACAGAGCGGTAATGACACCGGGGGAAGGAGGATGTTGGGATCTGCAGAGAGGCGCTGATCGCAGTTTGACAGCTGCTCTGATGTGttgcccccccccaaccccatccGTTTAAATAGTCAAAGGAATATGTCGAcgggcacagagacacagtgaagAGTTTCATGCTGTTCGATCAGGTGTGGCCGACCCGCGTCCTGCAGAGCCCCGGGGATGCCAGGTTTCTGTTTCATCCAGAGCATTTactgcttaattgagccaatcGTGGGTCTTAATTAGTCTAACTATCCCTGTGTTCCAGATGTCCTGTGATTGGTGAATTAGAGAGGCTTAGATATAGAGTGAATCTCCCCTGTGTCTTACCACCTCCAACCCGAGTCAGAGATATTCAGCTTTGAGATGAATGAACTACTGTATCAATAAACCCTGCTCAGTTTCAGAATCGTTATCCAACTGTCCAGCTCAGGTGTAgggtaattaagtaattgagcactttttttttgtactgtggTGTTTCCCCACTGTGTGGCCTCATTGACAGACAATTATTGATCAAATAAAGGAATAGAAAATTCCCTATTAAAATACTTTCAGTGAGGAAAAAGCTATAAAATGTGTTCACTATTGGGTTTTTGTGAACAGACAATAAACCCCTCACTACCTCAGTAACCTGGCTTTAAACCAGGCTTTTAGGATTTTGCACAGGTGTGTCATGTTCTCGCTAATTCCCTGTCACTTCTGTCTTGTTGTCTACTTATTATTTCTGTGTAGTTCAAACATTAGACTACCGGCACTCCAGAGCAGTGTAGAGCACAATTATGTAAATAGGctaataaagaaaatctcattAAAGGAAGGGagtttaatgaaagaaaatgaaaatcactgcatcaattatacaaatgaaaagttattttcGGCATTTCTTTTCCTACAGTGAGAACTGTTTGACACTGCTTTCATGAACCCTCAATATCCCAGATACAGAGTGGAAATGTGTCCtgtactgatttgtttttcGACTCGAAAAATGATTCACACACCTGTGATGAAATATTTATTGCAGGTCCTCTGAGCAGAGAACAGTAATTGCTCAAAGTGCCCACCGTTGTATTGTGTTGTAGTTGTGCAgcaatatatataacaatgtaaCCTCAGCTGACAAGATTACAGCTCTTGTTGAGTTACGATTGCGGAGTACAAATGAAAGAGTTTATTAAGTTTTCAAGCTCTCGAGTTTTCTATTGCTGCACTGCGATGCATTTCTCTGAACAAGGTCTTCTTAACACTTGTGTCTCTATCAGTGAAGAGCTGAGattaaaaatgattgaaaataaa

Function

GO: NA

KEGG:

id description
K03850 ALG10; alpha-1,2-glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137753 lncRNA downstream 123625 5853814 ~ 5855502 (-) True G110015
TU137733 lncRNA downstream 174675 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 175866 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 398400 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 543363 5434937 ~ 5435764 (-) True G109916
TU137917 lncRNA upstream 835947 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 927585 6911876 ~ 6912252 (-) True G110165
TU137934 lncRNA upstream 953122 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 959896 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 1122290 7106581 ~ 7107138 (-) False G110195
AMCG00006481 mRNA downstream 195982 5772245 ~ 5783145 (-) True AMCG00006481
AMCG00006482 mRNA downstream 281471 5664975 ~ 5697656 (-) True AMCG00006482
AMCG00006477 mRNA downstream 322006 5653275 ~ 5657121 (-) True AMCG00006477
AMCG00006476 mRNA downstream 375394 5580430 ~ 5603733 (-) True AMCG00006476
AMCG00006472 mRNA downstream 427270 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006492 mRNA upstream 2359 5986650 ~ 5991143 (-) True AMCG00006492
AMCG00006490 mRNA upstream 10523 5994814 ~ 6001150 (-) True AMCG00006490
AMCG00006491 mRNA upstream 32343 6016634 ~ 6042924 (-) True AMCG00006491
AMCG00006493 mRNA upstream 67036 6051327 ~ 6067994 (-) True AMCG00006493
AMCG00006496 mRNA upstream 106934 6091225 ~ 6097143 (-) True AMCG00006496
TU137277 other downstream 1813527 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3649136 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3848872 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3954984 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 4097290 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 29813 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 801022 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1094098 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 2738097 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 2803527 8787818 ~ 8794062 (-) True G110520

Expression Profile