RNA id: AMCG00006488


Basic Information

Item Value
RNA id AMCG00006488
length 3119
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00006488
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5989489 ~ 5996070 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTACCGGAACCCCCGAGTTATCGCGATGCTGTCCTGGCCAATGCAGAGCGGGGCTTTAAGTCACATGACCGTCTGGCTATTGGTTGCAGAATTTGAATTTTGTTATGGCATTATTGGGGTAAAGGAAGTAAATTTCGCAGTCTTGTTCATTATGGTTCTTCAGtacaattgcatttaattacaaacGTGTTGTTTTGGGCGAACAGTTCAAGTATTTCGTTAAATATAAGTCGCGTTACTGCGTTGTTTTCATGCGGTGTTTGGCTCATGAAGACAGTTACTGACCTTCGCAAGTGATCTGTGTGTATTTAGTGACTGTAGTTGGTTTTAATCACAATTTTCAATTCGTGTTGTAATATCTGAGCTGAGCGAGTGTTTGGGACAGTTTGGGCAGCAATACATCTTCTTGGATCGGTCCCCATATATTATAGTGGgcctgctactactactactactactactactactacactactACATTGGCGAAGATCTGGAATAAACGCGTTCTGAAAGTCGACTTGTTACATTGACTGGGAAGAGAATGGATTCACTGAACTGCAATGAATTTGTTCCCCTGGCAGAGGAGAAGTTTGATTTTGACATCTCATTGTCACCCACAAGTGGCAGTGGTGACAATGAGGACGATGATGAAGTGTTTCTGGGGCCGGTCCGCCATAAAGAGAAATGCGTAGCGGTGGGGCTTGACCTGCAGACGGACGACAAGGAGAATGCTCGGCCCTCGGGTGGCGGCTGGAGTCCGTTAGCTGGAGACAAGTTTGTTGAAATTTTTAAAGAAGCCCATTTATTGGCCCAGCGCTTTGAAAACAGCACCGACGGTCCTCGGGCTTCAGTGAAGCCACGGGTGAAAGCCGGGACGAACGAGGTGGTGGAAAAGTTTGTAGAAGATTCCAGGTCTAAACTGAACCTCTTCAACACCCCGAGAGATCCTGCCATCAGCCCTGTGAAGAGAGAAACCTACTGCGTTCAGGACAGCCCCTTTAAGCAGCTTCCTCCAGCGATCCAGCAACGTCTCCTCAGGTCACAATCTGCTGCAAGTCCTATAAAACAAACCTCCGTCTCGTCCAGTCCAGCCAGAGCTTGTAAAACCCAATTGCACAAACCCAGTCTAGGAAGTAAAGCAGCTCTAGCCTATGCCAGTCGAGTGCTTCCTAACAGAGCCATGGCTCCCCCGACGAGGGAGCAAACTGAAGAAATGAGAAGCAATCTGGCTGCAACGAAGCCTAAAGCTGCTCTGAAAAACAGCCCTCCCAGAGTACGACACAGCAGCGCAGAGTCCCTGGAGGATCCTAACTCGGACAATGCTAGTTTTACTTCAGATGTGAGCGATTCGTCCTTAAAAAGTGCTCTGCCAGTAAAGAGGATGGTCCCTGTTCCTAAAAAGATCGGTCTGCATAAACCACATGCCATAAAACCGCCAGCTCAGCGGAACAAAAGGATCATGCCCGACAAGAAAAGAGGGGCCTCGTCTTCCTCTTCGTCCTCCCTGTCGAGTATGAACTCCAGTCTCTCGGTCTCCCCTGCGGTCAATGCGGGTAAACCTAATTCATCTCTAAACTCGTCTGTGAGTAAAGTAACGCAGACGCACCGATTGGCAGCACCTAAGGCAGGAGGGAGCCTGTCCACTTCTGTCCAAGCGAAGAAAGCCCTGGCCCTTCCCTCCAAACTGACGAAGTCGTCCAGTCTGAACAAGCTTTCGACTCCCCTGAGGAAACCAGACCCTGCCAATCCACACCAGACACCGGCTGAGAGTCGCGCGCAGAGGCTGGGCTCGGTACCGGGCTTGTCCAGTTCCTCGGCGCAGATCAAGACAGCGAGTGCGGCGAAAGGCAGCCCCAAACCGAAGGCCTCCGTGGCCCCCACGCCAACGGGCTACTTCAGAGGCGCGCAGCAGTCGGGAGcttcttcacctgACAACGCATCTAGGATAATGAAACCTAAGAGATTGATGACTTCTGTTAATGACAGTGATGCCCAGCCAGACGTGGCCGCTAGTGTTTCAGCCACAGACTGTTTTCAAACCCCCACCCTCACTGCGAAGACCAAGTCGGCGATGTCCAAGTTGAGGCGCTGCTCAGCCTTGCCCACGCCGGTCAACAGGCGCACCTCCGGGATCCCGGCCCTGACGCCCAAGAGCGTGACCAGGCGCTCCGTCTTCAGTCTGACGTCCGAGACCCTTGAAGTCTCTCTGTCCACCAAGAAACGATACCTTGTAAGTCCCACAGAGGGCAGAGATCCGCGGCAGTGTGCGCTCCAGAGCCACTCAGTGTCCAGGAAAGAGCCTTGTCCTCCGTCGCCCATTCCTCTCTGCTCGATGGACTTCTCTCCGGAAGAAGAGGATCATCCGAACCCACCCGAGCAGGAGTCTGCTGAAGTCCCGGTCCCTGAGGTACCCAGAGATCCTTCTGTGGGACACTCCGATGAAGACTCTGAAGATAAAGAGGTGCCGGCCCTTCCAGCACCTGAAGAGCAGTGGAAGGAGGACGCTGTTATGAGCCCAGAGCAGGAGGAGGTCTTGCTGGTGGAAGTGGCTGCACCTCCTGTCCTGAGGATGGAAGACCGACACCTCATCGACCTCTCCAACACCCCCGAGCTCATTAAAACGGCACCAATGAAGCCAGCTGTGAATGGACAGTTAATTGACCTGAGTTCTCCTCTCATAACTCTGAGTCCTGTGGCCAAGAGAGAGAGTTCTGTGGATTCGCCTCTGATCAAGTTCTCATTTTAGTGCAAACCTGTTTTAAGTCTGTCGAATCTTTGATTTTACAATGTAGTAGTTTtaaaagattatataaaaagaaaagctgtaatAATTACAAGGTTGGAATTTAATGCTATAATAAAGGTTTTGAATGGCAATGAAGAGTTTGACAATCTGAATTTAGCTTTGATTGCACATAAATGGGTAATTTTTCAGGTGTGACAAATCAAATCTGGGATtcaaattaagttttttttcatttattcccTTGAGGACACAATATTCCACTTCTTGTTTAATTTGACTTTGCTCACTTTTTTTGAAATCTTTGTACAATacagttattttctgttatttcgTCTTTCCTGTCATAATAAATCTTGCTGCTTGTTCTTGAA

Function

GO: NA

KEGG:

id description
K10129 GTSE1, B99; G-2 and S-phase expressed protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137770 lncRNA upstream 5239 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA upstream 5239 5983956 ~ 5984250 (+) False G110024
TU137710 lncRNA upstream 184930 5799600 ~ 5804559 (+) True G109978
TU137646 lncRNA upstream 443053 5546207 ~ 5546436 (+) True G109933
TU137535 lncRNA upstream 636319 5352456 ~ 5353170 (+) True G109837
TU137834 lncRNA downstream 222461 6218531 ~ 6220086 (+) True G110081
TU137910 lncRNA downstream 799679 6795749 ~ 6795994 (+) True G110147
TU137927 lncRNA downstream 859810 6855880 ~ 6857998 (+) True G110161
TU137933 lncRNA downstream 941174 6937244 ~ 6937664 (+) True G110167
TU137991 lncRNA downstream 1147197 7143267 ~ 7143659 (+) True G110201
AMCG00006487 mRNA upstream 3493 5984473 ~ 5985996 (+) True AMCG00006487
AMCG00006483 mRNA upstream 31439 5918930 ~ 5958050 (+) True AMCG00006483
AMCG00006485 mRNA upstream 135038 5808944 ~ 5854451 (+) True AMCG00006485
AMCG00006484 mRNA upstream 191182 5783737 ~ 5798307 (+) True AMCG00006484
AMCG00006479 mRNA upstream 219843 5763354 ~ 5769646 (+) True AMCG00006479
AMCG00006489 mRNA downstream 5051 6001121 ~ 6009470 (+) True AMCG00006489
AMCG00006495 mRNA downstream 112525 6108595 ~ 6128500 (+) True AMCG00006495
AMCG00006494 mRNA downstream 139437 6135507 ~ 6150798 (+) True AMCG00006494
AMCG00006497 mRNA downstream 226747 6222817 ~ 6234153 (+) True AMCG00006497
AMCG00006499 mRNA downstream 258918 6254988 ~ 6267136 (+) True AMCG00006499
TU137762 other upstream 6580 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 6580 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 860660 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 890791 5080881 ~ 5098698 (+) True G109795
TU137861 other downstream 523795 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 915806 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 1657602 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 2179690 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 2726380 8722450 ~ 8724066 (+) True AMCG00006552

Expression Profile