RNA id: AMCG00006489


Basic Information

Item Value
RNA id AMCG00006489
length 2277
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00006489
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6001121 ~ 6009470 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAGACTGTAGTGCAGCGCCGTGTTTCCCGTCGAGCGTGTTTTGTTGACGGACCGACAAAGATGGCGCCTCCCTTGAATGAACGTGAATTATTAATATCACACTTAGTATGAGGAtcgtttgattgttttgttgtttgtttccgtgtatgtgtgtaatatatatttgtacacaaTGAATGTGGTGAGACACGTGGTGTGCGCCATGTCCGGAGGAGTGGACAGCTCTGTAGCAGCTCTGCTCCTGAAAAGAAGAGGTTACCAGGTGACTGGTGTGTTTATGAGGAACTGGGACTCCCTGGATGAGCGCGGTGTTTGTAACTCAGAGCAGGACTGTGAAGATGCCTACAAAGTCTGCCAGATGTTGGACATCCCCTTCCATCAGGTCTCATATGTTAAAGAATACTGGCATGAAGTTTTCAGTAATCTGTTGAAGGAATACCAGAAAGGAAGAACGCCAAATCCTGATATACTGTGTAATAAACATATAAAGTTTAAGCACTTCCTCCAGTATGCGATCAGCAACCTGGGAGCTGACGCCATAGCCACTGGGCACTATGCACGGACATCACAGGAGGACGAAGATGTGTTTCAGCAGAGGCACGTGGCCCGGCCTCAGACGCTCTTCAGAGACAGATTTGCGATAAGAAACCCTGTGAAACTGTTCCAGGGGGCTGATCTCATGAAGGACCAGACCTTTTTCCTCAGTCAGATATCCCAGGATGCTCTGCGGAAGACTTTATTCCCTCTAGCGGGGCTCACCAAAGACTTTGTGAAGAAGATGGCAGCCGAGGCCGGCTTCAGGCACCTGGTCAGGAAAAAGGAGAGTATGGGCATCTGCTTCATCGGAGAAAGAAACTTTGAGAAGTTTATTCTGGAGTATTTGGAACCTCAACCTGGAAATTTTGTTtccatagaagatgggaagattatgGGAACACACAAAGGCTGGTTCACCTTTACCCTGGGCCAGAGAGCCAGGATTGGGGGCCAGAGAGATGCCTGGTTTGTTGCTCCCACCACCAACCACCCGGCCCTGTTCAGAGACAACCTGCGCACGGACCGCTTTCACTGGATTGCCGAGGAGCCGCCGGTGGAGCTGGTCAGGAATATGATGATGGAGTGTAAATTCCGATTCCTGCACCAGATGCCGCTGGTACCGTGCACTGTCACACTGAACCAGGATGGATCTGTTTGGGTCACCCTTGCTGAGCCACTCAGAGCACTGACGCCTGGACAATTCGCCGTGTTCTACAAGGGCGACGAATGCCTGGGCAGCGGGAAGATCGTGCGCCTGGGCCCCTCCATGCACACCCTGCAGCTGGGCAGGGACCGGCAGAGGGGCGCGGAGACGGCGGAGGCCACAGCTGACCACGGCGCAGAACCCGCTGCTTGAGAAATCACAACCTGGCCACTCCTCTGTGCTGTAGACAGACCTGTGTGCAGGAGAGAGACACTGTGTCAATACtgtgacatttgtatttttaaggatgagggtttgtttgtttatttttgtacaaagaTGTGCAGCCGAGCAGAGAGaggtctgtttttctgtttatctgCAGTGTGTGACAGGCCATGCTCCTCACATGTGGCTGCTGTCCAACGATGATCTTTTGAAACGTCCCATGTGTGCCAGAGCTCTCTAACCAGCAGAACCAGATTGGCACATTTGAATTGGGCGACACGCACAGTTCGGTTGCTGTGGgaaaatatctgtttttgtttgataaaCAAATGATCTCTAGGTGTTTCagacaatataaaacatgtttaaaagtgCCTTTCCAACTCTTGTGtaaatgaatgcatgtattGATGTATGATTAGGAACACTATTTAGACCTCTAACAGAACAGACTGCTAATATGGTAATAATGACTTCAAATTATTGTATTGCACTAAAAGGCGCTAACGTgtgatttctgttttaattatgtatatttactaTTGTATATAAATGGTTCATCTCTTCATTTGCTACTAAAACTGCAAACAAGCCAATACaatctgtgattttaaataaGTCTTATTtttcaagtcaattaaactgcatattcaaatatatatttggcccaaagtactgtcacatgcagacaacaTATATTCAGATATTGTACATATTAATTATACTCATTATGTTCATATGCACGCTGATCATTTCTAAAGGTGAGGTAAATGTGTACAATTGGAACATGCTGTTAATCTTATAGATTTAATATTCAGCCTCTATACACTGTTCCTTGAAGGGGGGAAATAAACATCTTCACCTGCA

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0016783 sulfurtransferase activity molecular_function

KEGG:

id description
K21027 TRMU, SLM3; tRNA-5-taurinomethyluridine 2-sulfurtransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137770 lncRNA upstream 16871 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA upstream 16871 5983956 ~ 5984250 (+) False G110024
TU137710 lncRNA upstream 196562 5799600 ~ 5804559 (+) True G109978
TU137646 lncRNA upstream 454685 5546207 ~ 5546436 (+) True G109933
TU137535 lncRNA upstream 647951 5352456 ~ 5353170 (+) True G109837
TU137834 lncRNA downstream 209061 6218531 ~ 6220086 (+) True G110081
TU137910 lncRNA downstream 786279 6795749 ~ 6795994 (+) True G110147
TU137927 lncRNA downstream 846410 6855880 ~ 6857998 (+) True G110161
TU137933 lncRNA downstream 927774 6937244 ~ 6937664 (+) True G110167
TU137991 lncRNA downstream 1133797 7143267 ~ 7143659 (+) True G110201
AMCG00006488 mRNA upstream 5051 5989489 ~ 5996070 (+) True AMCG00006488
AMCG00006487 mRNA upstream 15125 5984473 ~ 5985996 (+) True AMCG00006487
AMCG00006483 mRNA upstream 43071 5918930 ~ 5958050 (+) True AMCG00006483
AMCG00006485 mRNA upstream 146670 5808944 ~ 5854451 (+) True AMCG00006485
AMCG00006484 mRNA upstream 202814 5783737 ~ 5798307 (+) True AMCG00006484
AMCG00006495 mRNA downstream 99125 6108595 ~ 6128500 (+) True AMCG00006495
AMCG00006494 mRNA downstream 126037 6135507 ~ 6150798 (+) True AMCG00006494
AMCG00006497 mRNA downstream 213347 6222817 ~ 6234153 (+) True AMCG00006497
AMCG00006499 mRNA downstream 245518 6254988 ~ 6267136 (+) True AMCG00006499
AMCG00006500 mRNA downstream 278264 6287734 ~ 6334843 (+) True AMCG00006500
TU137762 other upstream 18212 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 18212 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 872292 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 902423 5080881 ~ 5098698 (+) True G109795
TU137861 other downstream 510395 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 902406 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 1644202 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 2166290 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 2712980 8722450 ~ 8724066 (+) True AMCG00006552

Expression Profile