RNA id: AMCG00006490


Basic Information

Item Value
RNA id AMCG00006490
length 1905
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00006490
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5994814 ~ 6001150 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAACACGGCGCTGCACTACAGTCTCGCTCCCTCTGCCTGTCCTGTGATTGtgacttgtttttctcttgtggGGTGTGTTGCAGTAACTTTTCCCGTTactgtttggttttgttaaaccGCCTTGTCAAAAAATGGACGACTCTTGTGTAAATGTAATTAGTCTGGAGATGCTGAAGGAGGCCAGAGAGACAGTGATGGGCAGCCCGTTAGGGGTGATTAATACTGCCCTCATCCCCTGGCATCAGACCACCCTGCCGCCCAGCGTCGCCTGCTCCCTGCACCTCAAGATGGAGAACATGCAACGAACCGGTTCCTTTAAGATCAGGGGTGTCGCCAATCAGTTTGCCAGGAGGCCAGAGGGAGGTCAGTTTGTTAGCATGTCTGCTGGGAACTATGGGAAGGCTTTTGCTTTTGCCTCCAAGCATTATGGCACCCGAGGGAAAATAGTGATGCCAGAAACagccccttcctccagagcaaCTCTGATTGCTAGTTTCGGAGTTGAAGTGGAAAAGGCACCAACAACGCGTGTGCTGAGTGTCGTGGAGCGCTGTATCCGTGAGGACAATATGACGTTCCTGCACCCCTATGATGACATCGACCTGATCGCTGGGCACGGAAGTCTCGGTCTGGAAATCCTGGAAGTCGTGCCAGACCCTGATATCGTGGTCGTGTGCTGCGGGGGAGGAGGGTTACTTGCGGGGGCTGCAGCTGCTATTAAACTTTCAAACAGTCGTACAAAAGTGTACGGAGTGGAACCAGAAGGAGCCTGTACCATGTATAAGAGCTTCATTGAGAAGAAACCTGTATCAATGGATGCACAAAGCATCGCCTCAGGGCTGGCACCACCATGTGCAGGTGACCTCACCTACAGGATCTGCCAGCAGCACGTGGAGGGGATCGTGCTGGTGAGCGAGGAGCAGATCGAGGCGGCCGTCTCCACCCTGTACCGGGCCGGGCTGGTGGTGGAGCCGGCCGGAGCCGCGGCCTTCGCTGCCCTGGCGGAGGACAAGATCCCAGACGCCGCAGGGAAGAGCGTAGTGGTGGTCCTAAGCGGAGGCAATGTGGGGAAGGAGGAGCTGATGCACTTCCCCGACTAGAGCAGCAGGACAGTCTTCATAGTCGGACGGTAGTCTTCATCAAGTTGGGTTCATAAGAGAGCTCTGAATAGAAATCACTGACTTCAAGAACAAGCAGCAAGATTTATTATGACAGGAAAGAcgaaataacagaaaataactgtATTGTACAAAGATTTCAAAAAAAGTGAGCAAAGTCAAATTAAACAAGAAGTGGAATATTGTGTCCTCAAgggaataaatgaaaaaaaacttaatttgaATCCCAGATTTGATTTGTCACACCTGAAAAATTACCCATTTATGTGCAATCAAAGCTAAATTCAGATTGTCAAACTCTTCATTGCCATTCAAAACCTTTATTATAGCATTAAATTCCAACCTTGTAATTattacagcttttctttttatataatcttttaAAACTACTACATTGTAAAATCAAAGATTCGACAGACTTAAAACAGGTTTGCACTAAAATGAGAACTTGATCAGAGGCGAATCCACAGAACTCTCTCTCTTGGCCACAGGACTCAGAGTTATGAGAGGAGAACTCAGGTCAATTAACTGTCCATTCACAGCTGGCTTCATTGGTGCCGTTTTAATGAGCTCGGGGGTGTTGGAGAGGTCGATGAGGTGTCGGTCTTCCATCCTCAGGACAGGAGGTGCAGCCACTTCCACCAGCAAGACCTTTAgcaaaaacacagcagagaTCCACGTACACAATCAACTCACTGGGTCTTGGGATTTACAGTTTAGCTTTAAATATGCCCGACGTCGGGTTTGTGACCATGGGACCTGGCACCCATACAGAAGAACACGG

Function

GO: NA

KEGG:

id description
K01754 E4.3.1.19, ilvA, tdcB; threonine dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137753 lncRNA downstream 139312 5853814 ~ 5855502 (-) True G110015
TU137733 lncRNA downstream 190362 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 191553 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 414087 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 559050 5434937 ~ 5435764 (-) True G109916
TU137917 lncRNA upstream 819088 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 910726 6911876 ~ 6912252 (-) True G110165
TU137934 lncRNA upstream 936263 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 943037 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 1105431 7106581 ~ 7107138 (-) False G110195
AMCG00006492 mRNA downstream 3671 5986650 ~ 5991143 (-) True AMCG00006492
AMCG00006486 mRNA downstream 10523 5979127 ~ 5984291 (-) True AMCG00006486
AMCG00006481 mRNA downstream 211669 5772245 ~ 5783145 (-) True AMCG00006481
AMCG00006482 mRNA downstream 297158 5664975 ~ 5697656 (-) True AMCG00006482
AMCG00006477 mRNA downstream 337693 5653275 ~ 5657121 (-) True AMCG00006477
AMCG00006491 mRNA upstream 15484 6016634 ~ 6042924 (-) True AMCG00006491
AMCG00006493 mRNA upstream 50177 6051327 ~ 6067994 (-) True AMCG00006493
AMCG00006496 mRNA upstream 90075 6091225 ~ 6097143 (-) True AMCG00006496
AMCG00006498 mRNA upstream 190822 6191972 ~ 6217508 (-) True AMCG00006498
AMCG00006502 mRNA upstream 753631 6754781 ~ 6768791 (-) True AMCG00006502
TU137277 other downstream 1829214 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3664823 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3864559 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3970671 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 4112977 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 12954 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 784163 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1077239 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 2721238 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 2786668 8787818 ~ 8794062 (-) True G110520

Expression Profile