RNA id: TU137807


Basic Information

Item Value
RNA id TU137807
length 1926
RNA type TUCP
GC content 0.44
exon number 2
gene id AMCG00006491
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6014104 ~ 6042924 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGgaattttaaagaacaaaatcagCTACCCACCACCTCTGACAGACAAGAACATGAAAAACCGGCTGCGGGAGAAACTCTCAGACTACAACCCCCCAACCATCTCCTCGCGGACACCATCCATAGGGTCCGGCGAGGGGATCCGGCCATCCACGGGGGGCAGCAACGTCCTGATCAAGCCCCCCCAGCGGTCGCAGCCCAGAGAGCAGCAGAACGGCGTGGCCATGAGCGTCCGGACGGGGACCATCAACGGAGACACGTCCGACTCAGAGAACTCGAGAGGAGTAGCGCACTCGTAGCGTGGGACAGTAGGGGTCTCCCCCCCCCCGGCCCGTGCTCGCTGCTGGGTACTGCACACTTCACCGCAATCGGCTCCTATGGAGAAGATAATTACTGCAGACTTTTGCCTGCCGGAAAAAAGGGAACTTGGTCGAGCGCGTCAACCGGGGAGTTTGTAGTGGGGCACGTTTGTGCCAAAACCAAGGAGCAGGTGTGAGCGCCACTATGCAAGCGTGGACCGAGACAGTGTAAACATCTGCCTGGCGTTGGGTGGGACGTACGCTGCCATACAACGCTGCCCTCGCGGCTGTTTATCTGCTGAGCCGGGTGCAATAAACAAAGCCGCGAGGGGACGGCGGACACGTCAAAAAAGCTGGACGCACTACTGGAAGAACTGTCAAACTCGCCGAGATAAGGACTGAGGCGTCTCTGTGAGGCCGAGAGGTCTCTGCCTGGCCTtggagaggggggggagaaagaATAAAgtcttaaataaatgctttgtatGTTTGATAAAATTGTAGATATTCTTTTTgtatcatattttgtattttaactgttaggagagagagaagaggagctTGTCTGTATattgtcatttgtgttttaatccaCTTGCTGTTACAGGAGGATTGTGTTCTTGGGTGAATCTCCTGCTCTGACATGACATCTCGATTGCACAGTTGTTTTTGAAGTTGGCGTGTCGTATGATTGGTTTACAGTCAAGAAGATATTATTTTTGGAATTTGCACCCTTACTGGGGGGTCTGTGGTATTggttaatgtaatttcattaaGACAGGATATTTGTTAAATAAGGAAAAGGTTGAGAAGCTCCACTGTTTTTTATCttgaaggaaaatgtatataataccAATAGCTAAGCTGTAAACAGGAGCTTTAGTGCATAGACAAAAGCCAAATGTTCAACCGTTGCCTTACGGGACAAGAGCTGATAACTGGATCTAAGCAATATGGTGGGTTATTATTGGACCAGGCCTTGCACTCCAGAGACTGCAACAAAGCCCTGTTGCCAAGCTTAAATTGGAGGCCAGTTCTTGTGGCAACTTTAAATTTTTTCCAAAACCTTCTCACCAAACGctcacacacttttttttttttttcaccgtatgtttattttataggttgaaaataaatggtgaaGTTAAGGTCTAGAATACACAACAcattaaataagtatattttaacTTGCAATACACAAAAAAGGATGTAAGGATCACACTTTTCTACCATATATTCAAACTGTATTTGTTCCTTATGGGAATTGTATTACAAGCCACAGATGGTATTTAAATTGCACGAAACGTTTAAAAGAAATGCAGTGAATGTAGATTATTGACCAGTTCCCTTTCAGTTATCAACTGCTGTTCAAAAGTGCCTGGAAACAGATTCGCCTCCAACTCGCCGACTGTAAAATTGAGTTACACAGTAATTCACGTGTATAATATTGTATCCCAGTGTTTGCATCTCTACACTTGATGAAATcctttaattcagtttaaataatgatgcgttttattttttcttataaagcattgttttatataatgataGACACTGGAAATTTTTGtaagatatttgtatttattttttgcaaaacactggaaaaacatgcaagattgtaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137753 lncRNA downstream 158602 5853814 ~ 5855502 (-) True G110015
TU137733 lncRNA downstream 209652 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 210843 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 433377 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 578340 5434937 ~ 5435764 (-) True G109916
TU137917 lncRNA upstream 803295 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 894933 6911876 ~ 6912252 (-) True G110165
TU137934 lncRNA upstream 920470 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 927244 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 1089638 7106581 ~ 7107138 (-) False G110195
AMCG00006490 mRNA downstream 12954 5994814 ~ 6001150 (-) True AMCG00006490
AMCG00006492 mRNA downstream 22961 5986650 ~ 5991143 (-) True AMCG00006492
AMCG00006486 mRNA downstream 29813 5979127 ~ 5984291 (-) True AMCG00006486
AMCG00006481 mRNA downstream 230959 5772245 ~ 5783145 (-) True AMCG00006481
AMCG00006482 mRNA downstream 316448 5664975 ~ 5697656 (-) True AMCG00006482
AMCG00006493 mRNA upstream 34384 6051327 ~ 6067994 (-) True AMCG00006493
AMCG00006496 mRNA upstream 74282 6091225 ~ 6097143 (-) True AMCG00006496
AMCG00006498 mRNA upstream 175029 6191972 ~ 6217508 (-) True AMCG00006498
AMCG00006502 mRNA upstream 737838 6754781 ~ 6768791 (-) True AMCG00006502
AMCG00006503 mRNA upstream 761424 6778367 ~ 6779464 (-) True AMCG00006503
TU137277 other downstream 1848504 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3684113 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3883849 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3989961 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 4132267 1881282 ~ 1881837 (-) True G108829
TU137903 other upstream 768370 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1061446 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 2705445 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 2770875 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 2980694 8997637 ~ 8999264 (-) True G110570

Expression Profile