RNA id: AMCG00006494


Basic Information

Item Value
RNA id AMCG00006494
length 1275
RNA type mRNA
GC content 0.45
exon number 16
gene id AMCG00006494
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6135507 ~ 6150798 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgtatttatataaactcAGTTTCGTTTCTCTTTTCCTTGCAGAGGAAGAACTAAGAAAACTACGAGAAGAAACTAACGTAGAAACTTTGAAGCAGGAactagaaaaagaaagactaaAAAGAATAGAACTGGAACAGAAAGTCAATGAAGTTCTCAAAACAAGAATGGAAGAATCGCAGCCGCCTCCGAAAGCACAGCCGCCCCCCGTCAACGGAACAGACAAGAGGGGTGAAACACTCTACTCCAGAATACAGAAATGGCTTTATGATAAGTTTGGAGTGTATATAGAGGACTTCAGATTTCAACCAGAGGAAAACACTATAGAGACTGAAGAACCACTAAGTGCTAAACGGTTAACAGAAAACATGAGACGACTAAAGCGAGGTGCCAAACCTGTCACGAACTTCTTAAGGAATCTCTCGGCCTTATCTAACTGGCACTCTGTGTACACTTCAGCGATTGCCTTCATTATTTACATGAATGCTGCGTGGCATGGCTGGGCCATCCCCATGTTCCTGTTCTTGGCCATTTTGAGGTTATCTTTAAATTACCTCATTGCAAGGGGCTGGAGGATTCAGTGGAGCATCGTGCCTGAAGTTTCTGAACCTATGGAACCTCCAAAGGAAGACCTCACAGTATCAGAAAAATTCCAGTTAGTCCTTGACGTGGCACAGAAAGCACAGAATCTGTTTGGCAAGATGGCCGATGTCTTGGAGAAGATTAAAAAAATCTCAGACGCTTTGATTCCAAATCGAGAGCTGTCAGGGTATGAAAAGatcCAGCCGGTCACGTCACGGAGCAGTCTGGGAACTAATGTACCTTGTGGGATCAATCGAGAAGAGGAGGGCGGGAGATCGCACAGCACCAAAAAAGGCGCTTTTCATGAAATCTTCAACTTGTCGGAGGTTGAGCGCCCTCTAGCTGCTTGTGAAAACGGATGGCGGTGCTGCCTGATCAACAGAGACCGGAAGATGCCCACCGACTACATCCGCAACGGCGTCCTTTATGTGACTGAGAATTACCTGTGCTTTGAAAGCTCCAAGTCGGGTtcatcaaagaaaaacaaagttataAAATTAAACGACATCACCGATATTCAAAAGTACAAAGTGCTGTCTGTTTTGCCCGGATCAGGAATGGGAATTTCAATTGCGACACCATCCACACAAAAGCCACTAGTGTTCGGTGCTATGATCCACAGAGACGAGGCCTTCGAGACGATTTTCACCCAGTACACGAAAATCATGTCTTCAGCGTCCAGCAACGAAACCTAG

Function

GO: NA

KEGG:

id description
K23554 GRAMD4; GRAM domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137770 lncRNA upstream 151257 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA upstream 151257 5983956 ~ 5984250 (+) False G110024
TU137710 lncRNA upstream 330948 5799600 ~ 5804559 (+) True G109978
TU137646 lncRNA upstream 589071 5546207 ~ 5546436 (+) True G109933
TU137535 lncRNA upstream 782337 5352456 ~ 5353170 (+) True G109837
TU137834 lncRNA downstream 67733 6218531 ~ 6220086 (+) True G110081
TU137910 lncRNA downstream 644951 6795749 ~ 6795994 (+) True G110147
TU137927 lncRNA downstream 705082 6855880 ~ 6857998 (+) True G110161
TU137933 lncRNA downstream 786446 6937244 ~ 6937664 (+) True G110167
TU137991 lncRNA downstream 992469 7143267 ~ 7143659 (+) True G110201
AMCG00006495 mRNA upstream 7007 6108595 ~ 6128500 (+) True AMCG00006495
AMCG00006489 mRNA upstream 126037 6001121 ~ 6009470 (+) True AMCG00006489
AMCG00006488 mRNA upstream 139437 5989489 ~ 5996070 (+) True AMCG00006488
AMCG00006487 mRNA upstream 149511 5984473 ~ 5985996 (+) True AMCG00006487
AMCG00006483 mRNA upstream 177457 5918930 ~ 5958050 (+) True AMCG00006483
AMCG00006497 mRNA downstream 72019 6222817 ~ 6234153 (+) True AMCG00006497
AMCG00006499 mRNA downstream 104190 6254988 ~ 6267136 (+) True AMCG00006499
AMCG00006500 mRNA downstream 136936 6287734 ~ 6334843 (+) True AMCG00006500
AMCG00006501 mRNA downstream 390599 6541397 ~ 6546903 (+) False AMCG00006501
AMCG00006504 mRNA downstream 627173 6777971 ~ 6783364 (+) True AMCG00006504
TU137762 other upstream 152598 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 152598 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 1006678 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 1036809 5080881 ~ 5098698 (+) True G109795
TU137861 other downstream 369067 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 761078 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 1502874 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 2024962 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 2571652 8722450 ~ 8724066 (+) True AMCG00006552

Expression Profile