RNA id: AMCG00006495



Basic Information


Item Value
RNA id AMCG00006495
length 648
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00006495
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6108595 ~ 6128500 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCTCTGAGGAATACGCAGCACGCGGGCCCTTGCACATAATCCCGGGGATTAAGCAAGAACTGGAGAACTGGAGAGCCAAGCTGCGCAGAGCGAGACACCCTTTTCACAAATGTCACGTCGTATCAATATATACCCACGCTCAGGCGGTGCGACCTGTGGGATTTGGGGGCTCCGAGAATGAGGCAAGTAGCCGATTAGCCCATAGGGATGCCATTCACCATGTTAAGGTAAAGCAGAAGAACTCTCTGTTGAACATGCTAAAGCGGTTGGACAAAATAAGGTTCAGAGGTCACAAGCGAGATGAGTTCCTTGATCTAGCCGAGTCGCCCAACGCATCTGACACTGAATGTAGCGATGATGTCCCGGTGAAACCTCGGGCTTCTCTAAAAGACGCTGAAGATCTCAGAGACCCTgCTGGTCAAGGGGCAATGGCTTCAGCTATCCAAGAGTTCCAGAGAACAGAATCTGACAGGCTAAATGAGATCAAGGGTCATCTGGAAATTGCGTTACTGGAAAAACACTTCTTGCGCCAGAACTTTCCCAGAGGACACGATTGCGGGCCGCCAGTGATGAGGAACATAGGGTCAGAGGGCAAGGGCCTGTATCGTGATATTTCAGATGAAGAGGATGGAGAGGGAATCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137770 lncRNA upstream 124345 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA upstream 124345 5983956 ~ 5984250 (+) False G110024
TU137710 lncRNA upstream 304036 5799600 ~ 5804559 (+) True G109978
TU137646 lncRNA upstream 562159 5546207 ~ 5546436 (+) True G109933
TU137535 lncRNA upstream 755425 5352456 ~ 5353170 (+) True G109837
TU137834 lncRNA downstream 90031 6218531 ~ 6220086 (+) True G110081
TU137910 lncRNA downstream 667249 6795749 ~ 6795994 (+) True G110147
TU137927 lncRNA downstream 727380 6855880 ~ 6857998 (+) True G110161
TU137933 lncRNA downstream 808744 6937244 ~ 6937664 (+) True G110167
TU137991 lncRNA downstream 1014767 7143267 ~ 7143659 (+) True G110201
AMCG00006489 mRNA upstream 99125 6001121 ~ 6009470 (+) True AMCG00006489
AMCG00006488 mRNA upstream 112525 5989489 ~ 5996070 (+) True AMCG00006488
AMCG00006487 mRNA upstream 122599 5984473 ~ 5985996 (+) True AMCG00006487
AMCG00006483 mRNA upstream 150545 5918930 ~ 5958050 (+) True AMCG00006483
AMCG00006485 mRNA upstream 254144 5808944 ~ 5854451 (+) True AMCG00006485
AMCG00006494 mRNA downstream 7007 6135507 ~ 6150798 (+) True AMCG00006494
AMCG00006497 mRNA downstream 94317 6222817 ~ 6234153 (+) True AMCG00006497
AMCG00006499 mRNA downstream 126488 6254988 ~ 6267136 (+) True AMCG00006499
AMCG00006500 mRNA downstream 159234 6287734 ~ 6334843 (+) True AMCG00006500
AMCG00006501 mRNA downstream 412897 6541397 ~ 6546903 (+) False AMCG00006501
TU137762 other upstream 125686 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 125686 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 979766 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 1009897 5080881 ~ 5098698 (+) True G109795
TU137861 other downstream 391365 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 783376 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 1525172 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 2047260 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 2593950 8722450 ~ 8724066 (+) True AMCG00006552

Expression Profile