RNA id: AMCG00006496


Basic Information

Item Value
RNA id AMCG00006496
length 3546
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00006496
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6091225 ~ 6097143 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACTGGCGGCGCACTGGGTCTGGCTCCCTCTCCTGCTCCAGTGCCCCATGCTGGGCTGCTTCGACCTGCACCTCTCGGACACTTTGCAGGCGGGGGCTGTGCTGGCAAACCTGTCTCTGGGACCCGGTTGGATCTACAAAATCGACCGGACTTTGACTCCCAAGTACATGAGAAACTTTGTGGAGATGGACGCGCAGGACGGGGCGCTGCGTCTCTCTCGCAGACTGGACTGCGGGCGGCTGCTGGACAACCCGGCGCCGCTGTTCGCAAAGATCAGGTCTGTGGGCTCGGATGACTTCATTTTAACGCATTTTAACGCCTTCGTGCACGGCCAGGACTGTTTCATCAAGTACAAGAGAAAGCACGCCGCAGGTAAGCCCGATCTCTACATTAACTACCTTTCCAAAGTGGACGCGGCGTCCTGCGTCTCCGCCGGGAATCTGCTCCTGAGTGTGAAAGCGCATTTGCCGGGGTTCACCCGCAACCTGGCCTTTTTGAACTCCACCTGCACCGAGACGGACTGGAGGATGGTCTTCAATAATGGGAGTCTGACACTGAGTGGGAACCGCTGCCTGCAGCCCGGGGAGAGGGGCGAGGTGGACTTGCTGTGCACCCTGCAGAACTGGCACCAGGAGCACATCTCGGTGCGGGTGAAATTGCGCTTTATGACAGTGGACGAGCAGGGGCTGCTTCTCGACCATGCCAGGCGTAAAATAAACCCGTGGGGCAAACGGAAGAAGAGAAACGTGAACGCAGTCCCCCAGTTCCAGCTGCCCAACTACCAGGTGTCTGTGGCGGAGAACGAGCCGGCCGGGACCGGGGTCATCACGCTCAAGGCCACCGACCCAGATGAAGGAGAAGCCGGGAGGTTAGATTACACCATGGAGGCCCTTTTCGACAGCAGATCCAATGACTATTTCTACATGGACTCCCAAACGggcaccatcaccaccacccaGGCTCTGGACAGGGAGGTGAAGGACACCCACGTCTTCAAGGTGATGGCTGCGGACAACGGGACGCCCAGAAGGTTTACCATCGCCTATCTCACGGTCACTGTCAGCGACACCAATGACCACAGCCCCATCTTCGAGCAAACCGAGTATAAAGTCTCCATCAGGGAAAACCTGGAGGTGGGCTTTGAGGTCATGACCATCCGGGCCACCGATGGAGATGCGCCTTCTAATGCTAATATGATCTACAGGATTGTGAACGGAGACGGGAACAACTCCGCTTTTGAAATTGACCCCAGGACAGGGCTGGTTAGGATCAGGGTGCGTCCAGACAGAGAGACCATGTCCAAATACCAGTTAATCGTGGAGGCTAACGACCAAGGCAAGGACCCGGGTCCCAGGAGTGCCACGGCCACCGTATACATCACAGTAGAGGATGAGAATGACAACTCCCCTCAGTTCAGTGAGAAGAGATATGTGGTCCAGGTGCCTGAAAACATTGCAGTGAACAGCAAAGTGGCACAGGTGGAGGCGACGGACAAGGACGAAGGCAACAATGCCAAAGTCCATTACAGCATCATCAGCGGGAATGTGAAAGGGCAGTTTTACATCCACTCGCCCACCGGCGTCATCGACGTCATCAACCCCCTGGATTACGAGATCATCAGGGAGTATAATCTGCGAATCAAAGCGCAGGATGGAGGGCGGCCGCCTTTGATCAACAGCACGGGGCTGGTGGTGGTGCAGGTCGTGGATGTGAACGACAACGCGCCCATGTTCGTCAGCACGCCTTTCCAAGCGACTGTGCTGGAGAACGTCCCCATCGGCTACTCGGTCATCCACATCCAGGCCATCGACGCCGACGCCGGGGAGAACTCACGCTTGGAGTACAGGCTAATCGATACACCCCCGGGTTTCCCCTTCACGATCAATAACAGCACGGGCTGGATTACAGTCTCGGCTGAGCTGGACAGGGAGACAATTGACTATTACAACTTTGGCATCGAAGCAAGGGACCATGGGATCCCGGTCATGTCTTCCTCGGCGAGCGTCAGCATAACAGTGTTGGACGTGAATGACAACATCCCGACTTTCACTGAAAAAGTCTACTATCTGAGGATAAACGAAGACGCGGTCGTGGGCAGCAGCGTGCTGACCGTCACGGCCGTGGACAGAGATGTCAACAGCGTCGTCACCTATCAGATTTCCAGTGGAAACACTCGGAACAGATTCGCAATTACTAGCCAGAGTGGTGGCGGCCTAATAACTTTAGCTCTGCCCTTGGATTATAAACAGGAGAGACAGTACGTCCTGACTGTCACTGCCTCCGATGGCACACGCTTCGACACGGCCCAGGTCTTCATCAATGTCACGGACGCCAACACACACAGGCCTGTCTTCCAGAGCGCGAATTATCAAGTGCTTATAAGCGAAGACAAACCCATCGGCACGACAGTGGTAGTGATAAGTGCGACGGACGAAGACACGGGGGAGAATGCGAGAATCACGTACATCATGGAAGACAATGTCCCTCAGTTTAAGATCGAACCTGATACAGGGGCCATCACCACCCAGATGGAAATTGACTATGAAGACCAGGCTTCCTACACCTTGGCAATCATCGCCAGAGATAACGGGATCCCCCAGAAATCGGACACCACGTACGTTGAGATTATTGTCCTGGACGCCAATGACAATGCCCCCCAGTTTCTCCGAGACATGTACCAGGGCAATGTCTTTGAGGATGCACCTGTGTACACCAGCGTCCTGCAGATATCTGCCTCCGACAGGGATTCGGCGTCCAACGGAAGAGTGAGCTACACTTTCCAAGGTGGGGACGACGGGGACGGGGACTTTGTCATCGAGCAGTACTCTGGAATCATCAGGACGGCCCGGAAGCTGGACAGGGAGAACGTCCCGGTTTATAACCTGAAAGCCTACGCCGTGGACAAGGGCGTCCCACCTCTGAAGGCCGCGGTGGATATTCAGATCTCCGTGCTGGACATTAACGACAACCCGCCTGTGTTCGAGAAGGATGAGTTTGACATCTACGTGGAGGAAAACAGTGCCGTGGGCTCCATCGTGGCCCGGATCACGGCCACCGACCCAGACGAGGGCACCAACGCCCAGATCATGTACCAGATTGTGGAGGGGAATATCCCAGAGGTGTTCCAGCTGGATATTTTCAATggagacctgatcgccctcacGGATTTAGATTACGAGGCCAAACGGGAGTACGTGATTGTTGTCCAGGCGACGTCTGCCCCGCTGGTCAGCCGGGCCATCGTTCACATCCGCCTTGTGGATATAAATGACAATGACCCCGTTCTGCAGGACTTTGAGATCATCTTCAACAACTATGTCACCAACAAGTCCAACAGCTTTCCCTCCGGAGTAATAGGGAAGGTGCCCGCGTACGACCCCGACGTATCGGATAAGCTTCACTATGCCTTCATAGAGGGCAATGAGTTGAGTCTGCTGCTCCTCAACCAAGACACGGGGGAGCTGAAGCTCAGCAGAGACCTGGATAATAACAGAGCGCTGGAGGCCCACATGAAAGTGTCAGTCACAGGGATGGAGGTGTAA

Function

GO: NA

KEGG:

id description
K04600 CELSR1; cadherin EGF LAG seven-pass G-type receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137753 lncRNA downstream 235723 5853814 ~ 5855502 (-) True G110015
TU137733 lncRNA downstream 286773 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 287964 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 510498 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 655461 5434937 ~ 5435764 (-) True G109916
TU137917 lncRNA upstream 723095 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 814733 6911876 ~ 6912252 (-) True G110165
TU137934 lncRNA upstream 840270 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 847044 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 1009438 7106581 ~ 7107138 (-) False G110195
AMCG00006493 mRNA downstream 23231 6051327 ~ 6067994 (-) True AMCG00006493
AMCG00006491 mRNA downstream 48301 6016634 ~ 6042924 (-) True AMCG00006491
AMCG00006490 mRNA downstream 90075 5994814 ~ 6001150 (-) True AMCG00006490
AMCG00006492 mRNA downstream 100082 5986650 ~ 5991143 (-) True AMCG00006492
AMCG00006486 mRNA downstream 106934 5979127 ~ 5984291 (-) True AMCG00006486
AMCG00006498 mRNA upstream 94829 6191972 ~ 6217508 (-) True AMCG00006498
AMCG00006502 mRNA upstream 657638 6754781 ~ 6768791 (-) True AMCG00006502
AMCG00006503 mRNA upstream 681224 6778367 ~ 6779464 (-) True AMCG00006503
AMCG00006506 mRNA upstream 758593 6855736 ~ 6860515 (-) True AMCG00006506
AMCG00006507 mRNA upstream 900404 6997547 ~ 7004873 (-) True AMCG00006507
TU137807 other downstream 74282 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 1925625 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3761234 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3960970 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 4067082 2020001 ~ 2024143 (-) True AMCG00006313
TU137903 other upstream 688170 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 981246 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 2625245 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 2690675 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 2900494 8997637 ~ 8999264 (-) True G110570

Expression Profile