RNA id: AMCG00006498


Basic Information

Item Value
RNA id AMCG00006498
length 3671
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00006498
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6191972 ~ 6217508 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAAACAGCCCACAGTGCTGACCTCCCAGCTGTGGATCAAAAGCAGGGCTCACGAAGTCACCTTCAACCGGGCGCTGCTGACATGGAGGCAGCTGGAGACGGGCAAGAAGCGGGTCTCCGGGCCCCTCCGAGCCGGTTTCTGCCTGGCAGAGGTTCTCCACAGAACGAGAGGAGTGACTCCAGGTAACCGCTGTGTGCCTGTGTCCGAAATTATTGCCGTTCGAGAGACAGAAGTGGACTGCCAAACGAAAGACAATGGGAAATGGCAGAAGATGTCACAGAAAACATCTGAGGCGTATCCGTACGCCTTCACAGTGTTCTATGTGGATCGAGCCGGGCAGCACCGCTGGCGTTGTGGCAGTGTGACGTTCTCCAGCAGCAATGCGGTTCTATGTCAACACTGGGTCCAGTCCATCAAGGAGCAGCTGGCATTGCTAACATGTCGACCGAAGCACTTGCTGGTGTATATTAATCCATACGGAGGAAAACAACAGGGCAAGCAGATTTATGAACAGAAAGTGGCTCGGCTCTTCTCTCTGGCTTCGGTTTCCACGGACGTGATTGTTACAGAGTGTGCGAATCATGCCAGGGACCATTTGAGAACTGAGGCCGACCTCTGGAAATATGATGGCATTGTTTGCGTCGGGGGGGACGGGATGTTCAGTGAGGTCATTCATGGGTTAATCTCGCGGACGCAGAAGGACTCTGGAGTGGACCAGAACTGTACCAAGGAAAAACTGGTTCAGTGCAGCCTCCGGGTTGGGATTATTCCAGCAGGTTCAACCGACTGCATCTGCTACGCAACGGTGGGCATTAATGACCCGGTGACGTCGGCCTTGCATATTGTCGTGGGCGACTCGCAGCCCATGGACGTGTGCTCGGTGCACCATAACAACACGTTTCTCAAGTACTCGGTGTCCTTACTGGGATACGGCTTTTACGGAGATGTGCTGACGGACAGTGAGAAGAAGCGATGGATGGGCCCGGCCCGATATGACATTTCAGGTATCAAGACATTCCTGTCCCATCACTACTACGAAGGGACGATATCCTTTCTACCAGCCAACGATGTCTTGGGGAATCCAAGAGACAAAACCAAGTGCAGAGCTGGTTGTTACATCTGCCAACACAATGGACAACTTCTCTCTAAAGAAGGAAAGGGAGGCAGGGGTGAGAGCGCCTTTAATGGGAATGGGGATGAAGGAGACTGGAAGGAGATCCAGGGGAAGTTTCTGGCCATCAACGCAGCCAGCATGAGCTGTGCCTGTCCCCGCAGTCCCAAAGGCCTGTCCCCAGCTGCACACCTGGCCGACGGCACCACCGACATCATCCTGGTGCGCAAGTGCTCCCGGCTCAACTTCCTGCGCCACCTGCTGCGCCACACCAGCAACTATGACCAGGTGCACCGAGTGAGAAAATTCAGGTTCACGCCAAAGTACTGCAAGTCTGAAGACCCCGACTTGAAGGATGTAAGGAAGAAGCTCTTCggccagatctgcagggaccaCCCGGCCTGCAGCTGCAGCACGGCAAACAGTAACTGGAACTGCGACGGGGAGATCCTCGACCACGCTGCGATAGAAGTGGGAGTTCACTGCCAATTGATAAAGCTCTTCGCAAGAGGAATTGAGGAGAAGCCCATTTTTGAAGACGTCTGTGGCCCCTGTGCAGTTTAGACACCAGAAGCGAACAAACGACTGGAGCAATATCCTCAAAATCTATTTTGTGATAAGAACGCCCCTTCAATAGATGTTTTTAgcattaaaaactatatatttaaatcggATGTtgatgcaaaaactaaaaacaaaacaaaaattgccAATGTTGCTTCAGTTTTGAAGAGAAAGTACCTTAAAACGTTTGCAATTACCCATGCAAACCGGGACGTCTGTGTACCGATGCGTTTCCTAGTTGATTCTTACTGCATTTATGGTGCTAAATCCTAGCTATgattttaaatggcatttcTTTAACACAGCTTTAGCGAGAAAGATACGATTTGATTCTGCCATCATTTTTCACTCACTTTGCTTCAGGGAAACGAGGGGCAATGTGGGAAATGGGCACAGCCTCCCGAACCTGACTTTCATGTTAGGAAGGATAGAAACATGAACTCATTAAGGATGTATGTTACTGCTGTAAAGCCACAACATGTGTTACTGTTGCAGTATGCATTTGTAGGAAGATTGCAAGAATGCATAACTTATGTTCAGGATACCACTGTTCATTTCTGCATTGTTAAACATCTAAGGTATGGATCACCGTCAGAATTTCAGGACTCAATATTAGCTGCCTCTACGTATATATTCCATGGGACTTTTTCCGTGGCAATTTAACGTACACCGCAAAAGCAAAATTAGCACTTTTCTAAGGATTTTGTGTACAGCATTAACgaataagaaaaagacaaaaatactcACCCAAGTCTTAACCTCTGGCTGAAACTTGATTCTCCTTCTTTAGCTTCATATGACATCTTGCAACTTGTCAATGCAAAGTATAGAATAACATTCCAGATGTAACGGTGGTCCATGTCACTCATGTCTCGCAGCAACATCTAAAGCTTTTTTTGGGGCATTTAAGTAGTATTTGCTAAATATTTTTCCATAGAGAACAGGTATACttgtttactgtactgtacaatatataacaaatccatattttaaacGCAGGAATATATTTATTACTAATTACTGTAGGAAATGCAGGTATTTAATAAGGTTAGTGTATGTTCACTGTGTGAATAGCTTTCTAGCTGTAGTTTGGTTCCATCCAAATAACTACTGTGTACCCTTGAACCTCCACAACAACCAACTCCAAAATGGGTTTTCTGTGTAGTTGTGTTATTGCTGTTATCCTCATGACTCCACAATCGATTCAGTTTCCCCGATTTTAGCTTTGTGTTGTCCAGCACTTGCTCATCATGTAAGCTGCCACGAGCATCTTGTATGACCACagcattaaacattttgttttagattttatgttattatgtttattttaagtttcgCTGCTGAATTCTGTGCCTGACTGCAGGTCTAAGTGATTTATCAGGTGAAACTCTCCTGGCTCTTCtaatgatatttatttatatatatatatatatatatatatatatatatatatatatagctatagcTATATTTTGTTCCATATTATGTAAGCAGCACATAACACCGATTTATGCACCATAACATGGACAGGAGAAGCTGCTGACAGTACTCGGATAGTCCCCCCGTGTATTGCTGCCATGCATTATAGCCTCATTACTCCACAAGGAGAAGGCTCATTTAGGGAAAGCTTGATTTCCCCTCTCAACACAACGGCTCAGTGTTGCAGACTCAGCAACACGTAAATAATCGTCTGAGCCACCGAACAAGTCTTTCTGCAGCCTGCCACACATTCCGCAGGGCCAGACCGTTCATCTCTAAAGGATGGCGCTCGGCTAAGTTCCCAGGCCAAAGGTGACTCAAATATCAATCAGTTATTCCTCACAGGGTACCTAAGTGGTTGTTTCATGACTGACTGGTTACAATCCCTTTATTATCTTGCTGGCTTCGAGATGACAATGGTTTGTACTCCACAAAGTTGATAACTGTTGTGTGGATTGTGTGATTTATTGGACATCATgtaaaaggaataaataaaggaaaaacaattgGAA

Function

GO: NA

KEGG:

id description
K04715 CERK; ceramide kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137753 lncRNA downstream 336470 5853814 ~ 5855502 (-) True G110015
TU137733 lncRNA downstream 387520 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 388711 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 611245 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 756208 5434937 ~ 5435764 (-) True G109916
TU137917 lncRNA upstream 602730 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 694368 6911876 ~ 6912252 (-) True G110165
TU137934 lncRNA upstream 719905 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 726679 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 889073 7106581 ~ 7107138 (-) False G110195
AMCG00006496 mRNA downstream 94829 6091225 ~ 6097143 (-) True AMCG00006496
AMCG00006493 mRNA downstream 123978 6051327 ~ 6067994 (-) True AMCG00006493
AMCG00006491 mRNA downstream 149048 6016634 ~ 6042924 (-) True AMCG00006491
AMCG00006490 mRNA downstream 190822 5994814 ~ 6001150 (-) True AMCG00006490
AMCG00006492 mRNA downstream 200829 5986650 ~ 5991143 (-) True AMCG00006492
AMCG00006502 mRNA upstream 537273 6754781 ~ 6768791 (-) True AMCG00006502
AMCG00006503 mRNA upstream 560859 6778367 ~ 6779464 (-) True AMCG00006503
AMCG00006506 mRNA upstream 638228 6855736 ~ 6860515 (-) True AMCG00006506
AMCG00006507 mRNA upstream 780039 6997547 ~ 7004873 (-) True AMCG00006507
AMCG00006513 mRNA upstream 860812 7078320 ~ 7089125 (-) True AMCG00006513
TU137807 other downstream 175029 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 2026372 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3861981 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 4061717 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 4167829 2020001 ~ 2024143 (-) True AMCG00006313
TU137903 other upstream 567805 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 860881 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 2504880 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 2570310 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 2780129 8997637 ~ 8999264 (-) True G110570

Expression Profile